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input_cds
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Version: 0.8.0rc1
Example:
```python
>>> import anndata as ad
>>> a = ad.AnnData(shape=(10, 20))
>>> a
AnnData object with n_obs × n_vars = 10 × 20
>>> a.write("1.h5ad")
>>> b = ad.read("1…
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@sitarapersad et al., thanks for this incredibly interesting package! I'm really excited about metacells, cluster-free DE, etc., coming through in scRNA-seq analyses to better dissect true biological …
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How was the pwm.h5ad file in the SEAcell_tf_activity.ipynb file constructed:
![image](https://github.com/dpeerlab/SEACells/assets/12750096/c2a71432-ea16-40db-8b9f-c29edc5d4a88)
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I am trying to run TOBIAS on my ATAC-Seq samples but it is taking way too long. So I checked the job stats and memory consumption.
`Maxvmem = 18.689G`
This is despite me providing TOBIAS with 150gb …
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Hi
First thank you for developing this amazing tool.
I am using scenicplus in a ubuntu server conda environment, which is not a root account.
i was in a peak calling stage but an error which …
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**Checks before submitting the issue**
* [x] I installed the latest Dictys version successfully
* [x] I downloaded the whole folder for the tutorial
* [x] I ran the tutorial cells and notebooks (if…
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Hello, thank you for your work with mosaic integration. I was attempting to run the demo, but found the 'dogma_cite_asap.h5' file is not in the data file. Could you please upload it?
I also had a …
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https://mp.weixin.qq.com/s/ZT9dj8ior5CMQlm_PJWIlQ
ixxmu updated
8 months ago
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Hello,
I am curious how much you guys have played with input length (down to, say, 500 bp rather than the default of 2114 bp). If I am reducing the input length, do I need to re-train a new bias mo…