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Dear Dr. Shcherbo
Recently,I read your article, it is a interesting job. When i tried to reproduce the Supplementary Fig.1, I couldn't get similar results
according to description of article(**T…
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Dear Dr Divate,
I am new with GUAVA-1. I got access to atac-seq data from a consortium (human brain samples). I have BAM aligned read data files and narrow peaks files for each subject, but when I r…
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## **Describe the bug**
I installed the pipeline a few days ago and am trying to test it on a small ATAC-seq dataset from ENCODE. The workflow spit out some fatal errors and stopped, seemingly after …
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https://mp.weixin.qq.com/s/SUZ0LzdOJaTjiQ3s2-OUng
ixxmu updated
2 years ago
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Hi,
when i run this pipeline, the error occured:
```
Can't find git repository config file -- Repository may be corrupted: /public/home/luzhang/.nextflow/assets/nf-core/atacseq
```
Can you give m…
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See [Deprecate X_normalization](https://github.com/chanzuckerberg/single-cell-curation/issues/199) for background.
**Note**: Pending requirements related to the [The schema policy for PII and depr…
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I have 2 baches of ATACseq data each batch has 5 fragments file.
example:
Batch 0 Batch1
T1 T1
T2 T2
T3 T3
T4 …
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Hello,
I got the following error when running export_pseudobulk() to generate pseudobulk ATAC-seq profiles. My data is seperate scRNA-seq and scATAC-seq from different cells but the same sample. All…
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Using STARE on single-cell sequencing data is very intriguing, and I'm very excited to see you can do this. I want to try STARE with my single-cell ATAC-seq data. But as part of my sanity check, I wou…
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Hi there,
I follow the vignette for bridge integration: https://satijalab.org/seurat/articles/bridge_integration_vignette.html using my ATAC dataset as query.
I encountered an error while runnin…