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For my university project we are editing a webservice, once cloned a piece of code from git hub, i cannot run cabal install within the directory. Could anybody help, this is the error message.
Many…
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Dear gpertea,
The program installation failed course of './samtools-0.1.18/bgzf.h:29:10: fatal error: zlib.h: No such file or directory'
The following is all report during installing:
make releas…
THZ34 updated
4 years ago
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Hi,
I am trying to install it to Ubuntu 18.04. I have the following error while installling. Any suggestion for solution?
package init file 'htslib/htslib/__init__.py' not found (or not a regu…
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`-R` is defined as "As for `-r`, `--regions`, but regions read from FILE; see Common Options" The definition of `-r` shows you can use the format chr1:12345 or chr2, for example. However, when I click…
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Hi,
I used glactools to convert multiple sample vcf file to acf format and finally treemix format
` ./glactools vcfm2acf --fai ../data/Camarosa_CMN_genomes.fasta.fai ../DoB_rand_samples_CallVariants…
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```
cc -O2 -std=gnu99 -DZSTD_MULTITHREAD -Wall -Wextra -Wshadow -Wformat-security -I../zstd/lib -I../zstd/lib/common -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/=. -fstack-prot…
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Hello,
I am able to run NanoPlot on the concatenated fastq of my raw reads, but it dies (log file attached) when I supply a bam file of the alignment to the reference.
[Rabiosa_bamNanoPlot_20181120…
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We can read data from VCF Zarr files with #40.
Ultimately we will need to read data from VCF files directly.
https://github.com/brentp/cyvcf2 looks to be a good option for this purpose.
Under…
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I was studying why FASTX.jl on gzipped FASTQ files was so slow in the benchmark at https://github.com/lh3/biofast. It appears the unzipping is at least 2x slower than whatever he uses for his C code.
…
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I am trying to produce BAM files from pacbio SAM files aligned with NGMLR. When I run:
sambamba view -f bam -o file.bam file.sam
I got the following error:
sambamba-view: Error readin…