wdecoster NanoPlot issues

wdecoster / NanoPlot

Plotting scripts for long read sequencing data

http://nanoplot.bioinf.be

MIT License

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issues

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NanoPlot and NaoStat Errors: site-packages/Bio/File.py", line 72, in as_handle with open(handleish, mode, **kwargs) as fp: TypeError: expected str, bytes or os.PathLike object, not TextIOWrapper

#375 HW411 opened 18 hours ago
1
#!NanoPlot -o nanoplot_output --fastq_rich barcode04.fastq.gz

#374 ghislain-ctl opened 22 hours ago
1
Report not generated: error tokenizing data

#373 pclavell closed 4 days ago
4
different NanoStats.txt file

#372 ScarlettPegany opened 2 weeks ago
4
Q10 to Q30 quality score thresholds not available in latest NanoPlot version

#371 sandratra-rab closed 2 weeks ago
3
NanoPlot not making figures: Error "matplotlib.cm' has no attribute 'cmap_d'

#370 cavery12 closed 3 weeks ago
3
NanoPlot 1.42.0 has crashed

#369 mithunbge06 closed 3 weeks ago
2
Not printing readID when run on fastq files

#368 pclavell closed 3 weeks ago
4
Request for detailed explanations of numeric values in NanoPlot report

#367 KushanManahara closed 1 month ago
2
Adding Q30 and Q50 to summary statistics of NanoPlot report

#366 Fedeluppi closed 2 weeks ago
4
setup.py problem

#365 lihaicheng7003 closed 1 month ago
3
Confusion regarding arrow formatted files

#364 TBradley27 closed 2 months ago
6
Running NanoPlot on aligned bam file demuxed by Dorado?

#363 tchrisboles closed 2 months ago
2
Unexpected keyword argument

#362 axelphilip closed 2 months ago
11
Wrong value for the mean read quality

#361 DenisFilloux closed 3 weeks ago
1
Resulting Image（png） Generation Issues

#360 RADIOMUMM opened 3 months ago
12
concatenate the different NanoStats.txt files

#359 SueFletcher closed 3 weeks ago
1
minimum read length

#358 lucyintheskyzzz closed 3 months ago
2
NanoPlot: error: one of the arguments --fastq --fasta --fastq_rich --fastq_minimal --summary --bam --ubam --cram --pickle --feather is required

#357 lucyintheskyzzz closed 3 months ago
4
Using barcoded BAM files with no summary

#356 Ge0rges closed 3 weeks ago
6
Quality Scores

#355 BerrocalRubio333 closed 3 weeks ago
3
Web Service not loading in CA

#354 jennifergribble-nanopore closed 5 months ago
7
Nanoplot Errno32 Broken pipe

#353 teodorabu closed 5 months ago
2
runs very slowly without "--only-report" option

#352 chucknordy opened 5 months ago
7
Negative values in Weighted Histograms

#351 LiaOb21 closed 6 months ago
4
Weigted Histogram

#350 AsmaaSamyMohamedMahmoud opened 6 months ago
4
issue/warning?

#349 gunjanpandey closed 5 months ago
1
pandas.value_counts is deprecated

#348 jodjo86 closed 7 months ago
1
AttributeError: PolyCollection.set() got an unexpected keyword argument 'stat_func'

#347 mjfos2r closed 5 months ago
2
--only-report option added

#346 juanjo255 closed 8 months ago
6
Return only the report

#345 juanjo255 closed 8 months ago
3
Error in running nanoplot .Doesnot produce combined result file.

#344 ap1438 closed 8 months ago
1
NanoPlot 1.41.6 has crashed

#343 SelfShubham closed 9 months ago
1
Difference in read quality output from bam and summary file

#342 teodorabu closed 9 months ago
2
Number of reads from NanoPlot doesn't match samtools

#341 KunFang93 closed 9 months ago
9
ValueError: Invalid character in quality string

#340 Sreelekshmi-291 closed 5 months ago
1
Nanoplot iterations produce different outputs

#339 ASTR44 closed 10 months ago
2
Thank you for your newest github release

#338 erinyoung closed 10 months ago
1
Import Error

#337 tahir58 closed 10 months ago
4
Problem ran NanoPlot

#336 gosalone closed 10 months ago
7
Not all dots seem to be plotted

#335 ryotag closed 10 months ago
6
Nanoplot quality thresholds are poorly tuned for current datasets

#334 nhartwic closed 5 months ago
3
module 'matplotlib.cm' has no attribute 'cmap_d'

#333 Ghahfarokhi closed 9 months ago
4
Update license; missed in 80caf99a88d80dc61a30e975a1aa4375a93a7be0

#332 cbrueffer closed 1 year ago
1
NanoPlot 1.41.0 has crashed :-(

#331 Ajuju0804 closed 1 year ago
4
mean quality is different between 1.40.2 and 1.41.0

#330 lovelynewGao closed 1 year ago
1
Timezone-aware issue when processing fastq rich data

#329 matinnuhamunada closed 1 year ago
0
NanoPlot 1.41.0 AttributeError: 'list' object has no attribute 'lower'

#328 ljz3216 closed 1 year ago
4
How is mean Qscore calculated? Why is it different from the mean of the mean_qscore from the sequencing_summa

#327 lgraciamaz closed 1 year ago
1
Online tool not working

#326 shamilton-jones closed 1 year ago
2