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Hi Florian,
I have been transitioning from ldpred1 to ldpred2 and as a sanity check I have been running a set of analyses on the exact same datasets. The summary statistics are from the UK Biobank …
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#### What is the problem?
I am not able to run `ukb-update` under a directory structure which contains a git repository. I get the following error:
```
[ERROR] dataset containing given paths is not…
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Hi there,
I'm getting singular matrix problems from (I think) this line:
https://github.com/weizhouUMICH/SAIGE/blob/9820dc26eae028e7f940c61bee9c20b9a4e44589/src/SAIGE_fitGLMM_fast.cpp#L889
I…
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As a follow-up to #1635 and with some wisdom from Nico given in related issue #1636, there are several conflicts between the license labels and license URLs. Most of these are due to the lack of speci…
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UK Biobank uses placeholder dates for GP events where the date matches the participants date of birth. Specifically,
* Where the date matches participant date of birth it has been changed to `02/02…
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Hi,
I'm encountering the following error when trying to run DeepNull:
`ValueError: invalid literal for int() with base 10 (see screenshot)`
The offending line seems to be https://github.com/…
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The code columns in the following tables contain minus codes. These probably have a special meaning and we should determine whether these should be included in the mapping or skipped.
covid19_emis_…
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The study spotlight on the dashboard is hardcoded as prevent-ad and the description is not dynamically generated from the DATS.json file.
1. Make the content dynamically generated
2. Should the se…
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Hello,
I tried running the Shiny tool as specified in the paper and after cloning the code for the shiny app. The shiny app runs, however I run into an issue with the power calculation.
Specifi…
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I’m getting the following error when I run step 1 using the UK Biobank data. I am running regenie from the docker image (v2.0.1). I made sure that I have permissions to write in the tmpdir directory. …