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In the MMseqs2 wiki
https://github.com/soedinglab/MMseqs2/wiki#how-to-set-the-right-alignment-coverage-to-cluster
It explains
--cov-mode 0
--cov-mode 1
--cov-mode 2
are long-cov, target-cov,…
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I can't get the example of using a custom clustering algorithm in ?consensus_clustering to work.
The result is identical whether c("pam", "agnes") or just c("pam") is used.
R version 3.4.1 (2…
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I know that could be quite unpopular clustering strategy, but did you consider clustering based on comparing profiles? That would require adding additional step in cascade clustering for clustering wi…
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## Time
**UTC Fri 11-May-2018 16:00 (04:00 PM)**:
| Timezone | Date/Time |
|---------------|-----------------------|
| US / Pacific | Fri 11-May-2018 09:00 (09:00 AM) |
| US…
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The hand drawn one in the README doesn't exactly look great...
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Hello,
Is there a way to merge paired reads before splitting them into sample files? I only have barcodes on one end and the problem I am having is that I cannot assign un-barcoded sequences (our rev…
rlh13 updated
6 years ago
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Hi Liz,
I just want to confirm if input file of Cogent is full-length transcript or both FL reads and non-FL reads? you know, after running collapsing script, representative sequences for each uniqu…
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Hi, this might be related to my previous post. I clustered OTUs at 99% ID and removed chimeras. then when mapping OTU list back to original sequences to create an OTU table, the table is missing one O…
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If a user needs to define custom inner products for general Hilbert spaces, what is the current state in Base for this type of generalization? https://github.com/JuliaLang/julia/issues/16573 is a rela…
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Hello,
I have a problem with the registered opening_hours "https://www.openstreetmap.org/node/559904758" "Tu-Th,Su,PH 12:00-23:00, Fr,Sa 12:00-24:00".
with the evaluation tool "http://openingh.ope…