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Running PGAP on a SPADES-assembled bacterial genome using my HPC (local option is an M1 MacBook, but it seems to not be supported). I ran the MG37 test successfully with no warnings or errors.
To e…
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Some GitHub repositories contain multiple analyses, note HWW, HZZ etc in:
- https://github.com/artfisica/atlas-outreach-cpp-framework-13tev/tree/1.0/Analysis
Note the common "Plotting" step in t…
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**Describe the bug**
I don't know actual problem. I ran for sometime and then just no result. i have attach the log file
[cwltool.log](https://github.com/ncbi/pgap/files/7930888/cwltool.log)
**To…
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Hello,
I am testing SJARACNe on my university HPC in a conda env.
I created a conda env with python 3.6.1, installed dependencies, and installed from source as described on README.
When runni…
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These are minor edits - and do not need to prevent the website from going live, but I just wanted to list them here for @lunacodes.
* For the development tools page:
** you probably don't need the …
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Hello PGAP developers,
**Describe the bug**
I used the test data and PGAP performed as expected, but when using my own data I get the error: WARNING Final process status is permanentFail
**To Re…
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Hi, I ran the test command, everything seems to be fine but the output file (consensus_network_ncol_.txt) is empty (76 bytes). What could be the possible reason?
Also, what is the best way to export …
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Where irregular restarts or partial re-runs demand validation rectification of overlapping datasets, the current methods involve the generation of dataset files with filenames (n).nc, or .trunc.nc, wh…
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Greetings,
I am having problems running PGAP on an HPC that runs with singularity. Similar to issue #86, I get these scores during the runtime report:
--- Start Runtime Report ---
{
"CPU c…