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jyyulab
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SJARACNe
Scalable Tool for Gene Network Reverse Engineering
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Did not find output file with glob pattern: ['TF_run_001.adj'].", {})
#51
FWYX
closed
3 months ago
1
Bootstraps terminated by signal: SIGTERM
#50
luyifei111
opened
3 months ago
0
Update setup.py
#49
ZebYulon
closed
3 months ago
0
Update README.md
#48
ZebYulon
closed
3 months ago
0
Update requirements.txt
#47
ZebYulon
closed
3 months ago
0
SyntaxError: invalid syntax
#46
MathildaStigenberg
closed
7 months ago
0
This is a successful case of installing the current version of SJARACNe on ubuntu
#45
leiyan
closed
9 months ago
2
Did not find output file with glob pattern: ['TF_run_001.adj'].", {}
#44
luochx5
closed
1 year ago
1
NodeJSEngine requires Node.js engine to evaluate and validate Javascript expressions
#43
Tangke98
opened
1 year ago
0
i can't assign a path for my tmp file
#42
li1311139481
closed
1 year ago
5
[Errno 13] Permission denied: 'create_consensus_network.py'
#41
albertop210
opened
2 years ago
2
ValueError: could not convert string to float
#40
SL1993
opened
2 years ago
0
empty file
#39
saisaitian
closed
2 years ago
2
Run with error
#38
YiyuCh
opened
2 years ago
1
empty output file
#37
liu7923
closed
2 years ago
5
empty output file
#36
zjgt
closed
2 years ago
6
ERROR Exception while running job
#35
hyosilpro
closed
2 years ago
5
numpy needs more stringency in version
#34
guillaumecharbonnier
closed
2 years ago
1
cwltool from requirements is not available in conda common channels
#33
guillaumecharbonnier
closed
2 years ago
1
Python version, has to be 3.6.1?
#32
jasonchian
closed
2 years ago
1
Add "ensembl_gene_id" as default identification for nodes
#31
itsyogeshd
closed
2 years ago
1
Problem finding sjaracne.exe
#30
albertoriva
closed
2 years ago
2
"rho" is probably named wrong
#29
adamdingliang
closed
4 years ago
1
create_consensus_network.py removes gene hg19-RP11-453F18--B.1 's suffix --B.1
#28
adamdingliang
closed
4 years ago
2
Permission Denied
#27
RavulaPitt
closed
2 years ago
4
command to install and ru SJARACNe (local)
#26
ERIGR
closed
2 years ago
1
problem when trying to runSJARACNe
#25
ERIGR
closed
2 years ago
2
problem to run sjaracne
#24
ERIGR
closed
4 years ago
1
Add documentation describing sjaracne parameters / suggested settings
#23
khughitt
closed
2 years ago
1
is there a way to run this excellent program in windows10 platform.
#22
guozihuaa
closed
2 years ago
3
The argument [adjmat_dir] for step [consensus] is required
#21
adamdingliang
closed
2 years ago
0
Cannot find probe: XXXX in "tmp/XXX/tf.txt" ... ignored
#20
SherryDong
closed
2 years ago
3
sjaracne.exe not found
#19
fossbert
closed
5 years ago
3
Add support to specify temp dir
#18
adamdingliang
closed
1 year ago
2
Fixed problem where name of gene could not have spaces
#17
jimmyv9
closed
5 years ago
0
Strings with spaces should be allowed as geneSymbol
#16
adamdingliang
closed
5 years ago
0
yml file is gone while rerunning cwlexec
#15
adamdingliang
closed
5 years ago
1
bwait command failed
#14
adamdingliang
closed
5 years ago
1
Add a feature to clean up builds in setup.py
#13
adamdingliang
opened
5 years ago
0
Cwl
#12
jimmyv9
closed
5 years ago
0
Issue: Permission denied
#11
MingBit
closed
5 years ago
4
Unit tests for SJARACNe python scripts
#10
jimmyv9
closed
5 years ago
0
igraph-python does not install
#9
decarlin
closed
5 years ago
1
Add support for specifying DPI tolerance parameter
#8
khughitt
opened
5 years ago
3
Update get_consensus_network.py to support single-directory adjmat filepaths
#7
khughitt
closed
5 years ago
1
Update getconsensusnetwork.py to support single-directory adjmat directories
#6
khughitt
closed
5 years ago
2
Failed to install python-igraph in St. Jude HPC
#5
adamdingliang
closed
5 years ago
2
README / dependency clarifications
#4
khughitt
closed
5 years ago
1
Possible to control memory / thread usage?
#3
khughitt
closed
5 years ago
4
No shebang line in generate_pipeline.py
#2
adamdingliang
closed
5 years ago
1
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