jyyulab SJARACNe issues

jyyulab / SJARACNe

Scalable Tool for Gene Network Reverse Engineering

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issues

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Did not find output file with glob pattern: ['TF_run_001.adj'].", {})

#51 FWYX closed 3 months ago
1
Bootstraps terminated by signal: SIGTERM

#50 luyifei111 opened 3 months ago
0
Update setup.py

#49 ZebYulon closed 3 months ago
0
Update README.md

#48 ZebYulon closed 3 months ago
0
Update requirements.txt

#47 ZebYulon closed 3 months ago
0
SyntaxError: invalid syntax

#46 MathildaStigenberg closed 7 months ago
0
This is a successful case of installing the current version of SJARACNe on ubuntu

#45 leiyan closed 9 months ago
2
Did not find output file with glob pattern: ['TF_run_001.adj'].", {}

#44 luochx5 closed 1 year ago
1
NodeJSEngine requires Node.js engine to evaluate and validate Javascript expressions

#43 Tangke98 opened 1 year ago
0
i can't assign a path for my tmp file

#42 li1311139481 closed 1 year ago
5
[Errno 13] Permission denied: 'create_consensus_network.py'

#41 albertop210 opened 2 years ago
2
ValueError: could not convert string to float

#40 SL1993 opened 2 years ago
0
empty file

#39 saisaitian closed 2 years ago
2
Run with error

#38 YiyuCh opened 2 years ago
1
empty output file

#37 liu7923 closed 2 years ago
5
empty output file

#36 zjgt closed 2 years ago
6
ERROR Exception while running job

#35 hyosilpro closed 2 years ago
5
numpy needs more stringency in version

#34 guillaumecharbonnier closed 2 years ago
1
cwltool from requirements is not available in conda common channels

#33 guillaumecharbonnier closed 2 years ago
1
Python version, has to be 3.6.1?

#32 jasonchian closed 2 years ago
1
Add "ensembl_gene_id" as default identification for nodes

#31 itsyogeshd closed 2 years ago
1
Problem finding sjaracne.exe

#30 albertoriva closed 2 years ago
2
"rho" is probably named wrong

#29 adamdingliang closed 4 years ago
1
create_consensus_network.py removes gene hg19-RP11-453F18--B.1 's suffix --B.1

#28 adamdingliang closed 4 years ago
2
Permission Denied

#27 RavulaPitt closed 2 years ago
4
command to install and ru SJARACNe (local)

#26 ERIGR closed 2 years ago
1
problem when trying to runSJARACNe

#25 ERIGR closed 2 years ago
2
problem to run sjaracne

#24 ERIGR closed 4 years ago
1
Add documentation describing sjaracne parameters / suggested settings

#23 khughitt closed 2 years ago
1
is there a way to run this excellent program in windows10 platform.

#22 guozihuaa closed 2 years ago
3
The argument [adjmat_dir] for step [consensus] is required

#21 adamdingliang closed 2 years ago
0
Cannot find probe: XXXX in "tmp/XXX/tf.txt" ... ignored

#20 SherryDong closed 2 years ago
3
sjaracne.exe not found

#19 fossbert closed 5 years ago
3
Add support to specify temp dir

#18 adamdingliang closed 1 year ago
2
Fixed problem where name of gene could not have spaces

#17 jimmyv9 closed 5 years ago
0
Strings with spaces should be allowed as geneSymbol

#16 adamdingliang closed 5 years ago
0
yml file is gone while rerunning cwlexec

#15 adamdingliang closed 5 years ago
1
bwait command failed

#14 adamdingliang closed 5 years ago
1
Add a feature to clean up builds in setup.py

#13 adamdingliang opened 5 years ago
0
Cwl

#12 jimmyv9 closed 5 years ago
0
Issue: Permission denied

#11 MingBit closed 5 years ago
4
Unit tests for SJARACNe python scripts

#10 jimmyv9 closed 5 years ago
0
igraph-python does not install

#9 decarlin closed 5 years ago
1
Add support for specifying DPI tolerance parameter

#8 khughitt opened 5 years ago
3
Update get_consensus_network.py to support single-directory adjmat filepaths

#7 khughitt closed 5 years ago
1
Update getconsensusnetwork.py to support single-directory adjmat directories

#6 khughitt closed 5 years ago
2
Failed to install python-igraph in St. Jude HPC

#5 adamdingliang closed 5 years ago
2
README / dependency clarifications

#4 khughitt closed 5 years ago
1
Possible to control memory / thread usage?

#3 khughitt closed 5 years ago
4
No shebang line in generate_pipeline.py

#2 adamdingliang closed 5 years ago
1