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As discussed briefly in #1475 ,
> We're aware that creating a disease is complicated. We could, however, think of a way to only add a new disease by the name. The system can set defaults for a newl…
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`# %% Imports
from utils import DataLoader
from sklearn.ensemble import RandomForestClassifier
from sklearn.metrics import f1_score, accuracy_score
from interpret.blackbox import LimeTabular
from inte…
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The V2 semantic similarity endpoint had support for expanding disease or gene IDs, so we should match that in V3.
I'm guessing we might want to run an entity `get` on each ID provided, and then we…
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This is likely a fix that will need to happen to cat_merge, which applies mapping, or to the gene_mapping repo to change the order there, but it seems reasonable to start with an issue in this repo as…
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**Please describe the association type you would like added to the knowledge graph (KG)**
Using the [Biolink:ChemicalToDiseaseOfPhenotypicFeatureAssociation](https://biolink.github.io/biolink-model/d…
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I'm curious about statistical models that would predict the time of onset of disease conversion based on clinical measurements. I've seen the terms "survival analysis" and "cox proportional hazards" u…
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While checking for precedents for issue #69 (drug substances: NE vs. concept) I noticed a general annotation inconsistency regarding diseases:
- _cancer_ is always annotated as a regular concept
- _AI…
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I am trying to run the following federated query on a virtuoso 7.1 instance:
SELECT ?pwIdentifier ?disease ?pwTitle WHERE {
SERVICE http://beta.sparql.uniprot.org/{
?protein up:annotation ?annota…
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* How many people are obese (by country)
* Counts and BMI averages
* Weight distribution as well as means as means can be misleading
* What is definition of obesity
Sub items: #291 (how many…
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**Mondo term (ID and Label):**
MONDO:0957426 autosomal recessive hyper-IgE syndrome
**Suggested new label:**
If this is, indeed an exact match to Orphanet 641368 , then the pref name should be Au…