NCATSTranslator Text-Mining-Provider-Roadmap issues

NCATSTranslator / Text-Mining-Provider-Roadmap

Roadmap and issue tracking for the NCATS Translator Text Mining Provider

MIT License

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issues

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Deploy TRAPI 1.3

#97 capasfield closed 2 years ago
1
Add attribute to indicate agreement with SemMedDB for targeted assertions

#96 bill-baumgartner opened 2 years ago
0
Please add `x-trapi` block to OpenAPI spec of Text Mining Targeted Assocations KP

#95 maximusunc closed 2 years ago
1
Update READMEs

#94 bill-baumgartner closed 3 years ago
0
Formalize TRAPI attribute structure for concept cooccurrence query results

#93 bill-baumgartner opened 3 years ago
0
Develop KGX serialization component for text-mined assertions

#92 bill-baumgartner opened 3 years ago
2
Request for Demo C: chemical-disease correlated_with edge with score to aid in ranking

#91 bill-baumgartner opened 3 years ago
0
Incorporate DrugProt corpus data into training of BERT models

#90 bill-baumgartner opened 3 years ago
0
Returning unexpected partial results for a two-hop query

#89 bill-baumgartner opened 3 years ago
1
Release new KG that uses human UniProt identifiers for nodes instead of species non-specific Protein Ontology identifiers

#88 bill-baumgartner opened 3 years ago
1
Chemical -neg-reg-> EGFR not returning results

#87 bill-baumgartner opened 3 years ago
0
add inference tests

#86 bill-baumgartner closed 3 years ago
0
add live testing framework

#85 bill-baumgartner closed 3 years ago
0
New association type request -- gene located_in location (anatomical entity, cell type, cellular component)

#84 bill-baumgartner opened 3 years ago
0
New association type request -- disease has_phenotype (has_symptom) phenotype

#83 bill-baumgartner opened 3 years ago
1
Fix Biolink categories used for Sequence Ontology concepts

#82 bill-baumgartner opened 3 years ago
0
Mappings to abstractions in the gene/gene-product hierarchy

#81 bill-baumgartner opened 3 years ago
1
Switch to new biolink:entity_negatively/positively_regulates_entity predicates

#80 bill-baumgartner opened 3 years ago
0
Capture Tags in Pubmed Regarding Paper Type

#79 MarkDWilliams opened 3 years ago
0
Proposal for EPC representation for the text-mined association KG

#78 bill-baumgartner opened 3 years ago
1
Higher order UTF-8 encoding not maintained throughout all article processing

#77 bill-baumgartner closed 3 years ago
0
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 6 when chosen]

#76 bill-baumgartner opened 3 years ago
0
Complete manual annotation of [fill in Segment II Biolink Association 6 when chosen]

#75 bill-baumgartner opened 3 years ago
0
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 5 when chosen]

#74 bill-baumgartner opened 3 years ago
0
Complete manual annotation of [fill in Segment II Biolink Association 5 when chosen]

#73 bill-baumgartner opened 3 years ago
0
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 4 when chosen]

#72 bill-baumgartner opened 3 years ago
0
Complete manual annotation of [fill in Segment II Biolink Association 4 when chosen]

#71 bill-baumgartner opened 3 years ago
0
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 3 when chosen]

#70 bill-baumgartner opened 3 years ago
0
Complete manual annotation of [fill in Segment II Biolink Association 3 when chosen]

#69 bill-baumgartner opened 3 years ago
0
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 2 when chosen]

#68 bill-baumgartner opened 3 years ago
0
Gene to biological process association extraction

#67 bill-baumgartner opened 3 years ago
2
Build & integrate Biolink association extraction component for [fill in Segment II Biolink Association 1 when chosen]

#66 bill-baumgartner opened 3 years ago
0
Complete manual annotation for chemical-causes-disease

#65 bill-baumgartner opened 3 years ago
0
Develop and run a concept recognition pipeline for MPO over all full-text documents

#64 bill-baumgartner opened 3 years ago
0
Apply identified concept opposite pairs to concept recognition

#63 bill-baumgartner opened 3 years ago
1
Incorporate opposite_of relations in existing ontologies where applicable

#62 bill-baumgartner opened 3 years ago
1
Expert evaluation of novel concept opposite/non-opposite pairs

#61 bill-baumgartner opened 3 years ago
0
Evaluate novel concept opposite/non-opposite pairs via crowd sourcing

#60 bill-baumgartner opened 3 years ago
1
Develop concept opposite/non-opposite pairs using context-free grammars

#59 bill-baumgartner opened 3 years ago
1
Generate concept opposite/non-opposite pairs through manual morphological and syntactic analysis

#58 bill-baumgartner opened 3 years ago
1
Extend opposite mining code to handle multi-word concepts

#57 bill-baumgartner opened 3 years ago
1
Define use cases for concept opposites in the Translator community

#56 bill-baumgartner opened 3 years ago
1
Design draft email to send to authors of PMC non-OA documents

#55 bill-baumgartner opened 3 years ago
0
Investigate email mining from PMC OA document and linking to authors in PMC non-OA documents

#54 bill-baumgartner opened 3 years ago
0
Incorporate the BioRxiv preprint repository into the full-text processing pipelines

#53 bill-baumgartner opened 3 years ago
0
Build an XML parser for the BioRxiv XML format

#52 bill-baumgartner opened 3 years ago
0
Incorporate the PMC Author Manuscript collection

#51 bill-baumgartner opened 3 years ago
0
Develop infrastructure to build KGs at a periodic interval

#50 bill-baumgartner opened 3 years ago
0
Develop infrastructure for running all text-mining pipelines over new documents at a periodic interval (daily)

#49 bill-baumgartner opened 3 years ago
0
Integrate the Turku neural dependency parser into the text-mining pipelines

#48 bill-baumgartner opened 3 years ago
0