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**[Original report](https://bitbucket.org/joe_fowler/mass/issues/223) by Joseph Fowler (Bitbucket: [joe_fowler](https://bitbucket.org/joe_fowler), ).**
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Right…
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**Is your feature request related to a problem? Please describe.**
When matching GCMS data (EI fragmentation) no parent mass is present.
Spectral matching can be done using cosine score and a larg…
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IMassSpectrumComparator defines the method IMassSpectrumComparator.compare(IScanMSD, IScanMSD) that returns an IProcessingInfo.
The drawback of this approach is, that if one want to compare several m…
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Created a new virtual environment and cloned the branch with particle_mass in it. Then tried to install following the requirements.txt:
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pip install -r requirements.txt
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**I'm submitting a...**
- [ ] bug report
- [ ] feature request
## Current Behavior
I installed the [conda compiler tools](https://conda.io/docs/user-guide/tasks/build-packages/comp…
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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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I tried to run Groupwalk.py on two files created with tide-search, but it gave an error. There were also a few warnings which may or may not be of interest.
```
Groupwalk.py rep1/C1/narrow.tide-s…
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**Describe the bug**
I am running open workflow in the headless mode over a timsTOF-pro data/file and got the following error
```
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException…
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### Basic information
* My operating system: Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz 2.21 GHz, 16.0 GB (15.8 GB usable)
* My MZmine version: MZmine3.0.21-beta
### What happened
I have mzML…
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The radii that I'm retrieving from the AnnularSpectra instance that created the profile:
[Annulus Centres] - [ 0. 137.5137532 229.18958866 320.86542413 421.70884314
568.39017988 953.428…