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For region-based segmentation tasks, such as BraTS 2021, whose labels contain four values: 0, 1, 2 and 3, I found that trainer will set `num_classes` to 3, ignoring the background class, but strangely…
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Hi,
Thanks for open-souring the amazing work. I am wondering if you can release the fine-tuning weight and preprocessing of your second place solution in [MICCAI SegRap 2023](https://segrap2023.gr…
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Hello,
I've ran the preprocessing and I've noticed that the batch size is set to two (In the .pkl files).
However, the images are resampled to the median spacing of the dataset, thus making imag…
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Hello, any hint for this error? It happens during inference.
2023-08-14T18:51:18.968000+00:00 0%| | 0/18 [00:00
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Hi all,
it took me about a week to fix this issue where I made changes to files in the `nnUNet_raw/nnUNet_raw_data` folder to be properly incorporate into the training procedure of nnUNet. Here I w…
zwep updated
9 months ago
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### :question: Question
Hi,
My linux server was interrupted, causing the training task to stop. Since I have been training for a long time, I do not want to start the training again. Can nndetecti…
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Hi, I have a problem with training nnUNetv2. When I run my preprocessed dataset (any fold), in the first epoch (as well as in the next ones) I get the following output:
```
2023-08-09 14:55:25.642…
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Hi! Your Idea is owesome ! And I'm interesting in how can i do in order to adjust with my own dataset. I have generated corresponding json file ,but I still don't know what I should do next.Should I c…
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Dear Zhack47
I hope this message finds you well. I am reaching out to express my keen interest in the training algorithm you have developed for medical imaging. Having dedicated significant time to…
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Hello DKFZ-Team,
thanks for the amazing work on the nnUNet! I am a big fan!
Is there any option of sharing the MSD Task performance per fold for each task, which would be in the "fold_*/validation…