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How will I use ERMSD collective variables?
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Hi, Thanks for the excellent work.
I installed the tool and can run the file generation command:
`cgdms makeinput -i 1CRN.pdb -s 1CRN.ss2 > 1CRN.txt`
But I cannot run the `simulate` command. …
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get a feature vector that measures the mismatch of a given feature vector with a library of topologies.
For now, we do not need to depend on the moffragmentor. We can just accept a structure objec…
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I am trying to install Autdock Vina 1.2.3. I have used `chmod` to solve the `Permission denied` error. However I was faced with an additional issue as shown below:
I have tried 1.2.2 and 1.2.0 and …
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Sorry for opening yet another issue, I would not (yet) have done this if this was only with one molecule
but I even get the following error
```
Traceback (most recent call last):
File "/work/…
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The run for the grading diagnostic in recipe_perfmetrics_CMIP5_4cds ends with a diagnostic failure. However, inspecting the log does not give much of an idea as for why. It actually looks like the dia…
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Hi, I am using the TMalign wrapper and I am interested in getting both TM-scores, as well as the RMSD value from a single TM-align command. Is it currently possible to capture or return those values ?
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I used gmx_MMPBSA for calculating the binding free energy between RNA and protein for 2500 frames using 5ns of trajectory as input. PBC was removed and the trajectory was fitted. The command used wa…
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