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panpipes `integration` keeps terminating for me at the plotting stage when I run it on an interactive session on a cluster.
The error is always the same indexerror:
![Schermafbeelding 2024-04-25 08…
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Dear nextNEOpi developers:
I use the HPC to run nextNEOpi test sample, I got the error below and I checked the rna_mapped_1.bam and rna_mapped_2.bam file are empty. Please help to identify and solv…
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…
gperu updated
3 months ago
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Hi! I seem to be caught in a catch 22. I am currently analysing some single cell RNA seq data and despite the code running smoothly I now have a cycle of two errors. After updating Seurat to version 5…
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Hello,
Apologies as strictly speaking this isn't a bug.
What's the correct interpretation of the member (?) forces which are written into the OpenFAST output files when OutAll=True in SubDyn?
…
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When running TEcount on my aligned files (aligned using) STAR and important the count data into R, I find that a lot of reads have not been counted from the data based on the 30-40% smaller library si…
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UpdateSeuratObject() function fails on newest version of Seurat.
Below code used to still work on Seurat 4.4 version.
Tested with TabulaMuris data set (available from here:
[https://explore.dat…
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I have been looking for a tool like this for a long time. And I am really looking forward to using it. But when I try to upload a reference genome, I keep getting the following error:
Starting job.
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https://mp.weixin.qq.com/s/5Q-Ymo6X7zrFMyzrOqAfSQ
ixxmu updated
1 month ago
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I am currently trying to run STAR Fusion on a remote server within a conda virtual environment and i have installed star, star fusion, samtools, the following perl modules through conda install as spe…