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**1. What were you trying to do?**
We want to find the snp and indels variation from the result vcf file BS_graph_call.vcf.
**2. What did you want to happen?**
We want to find the reason that w…
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see #136 for an example description. Doesn't have to be much, but ideally should include the version of the genome assembly and what the annotations are/where they are from for a genome, and what is …
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The unit test 'smrt-pipeline.t' shows that there are still some random elements in the pipeline and
therefore it is difficult to reproduce results exactly with multiple pipeline runs. This becomes app…
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Here are a few suggestions for alignment block filtering that would be very welcome additions to the MafFilter software:
- updating the score for each block when the blocks are processed
- filtering…
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We found in the experiment that some experimental data generated by the CUT & Tag method showed abnormal enrichment effect. We used a chromosome centromere-specific antibody to mark the centromere pos…
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--Hi,
how to set Vardict to detect variants with VAF ~ 1%, which parameters can increase sensitivity ?
than you --
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Hi,
We've conducted some benchmarking in order to compare BWA-MEM to BWA-MEM2.x using multi-lane & library samples (reference genome - GRCh38).
It looks like BWA-MEM2 and 2.1 produced the almos…
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## Platform
- SeqAn version: 3.3.0
## Question
Is there a documented way to extract, from a pairwise alignment result, the alignment slice positions (equivalent to the coordinates[] list of…
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## Expected Behavior
Recently when we attempted to run AF2 on a complex but failed with following error message. We then test it with a notebook we ran before and same error was generated. Please hel…
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Hello,
Recently we have been using hybpiper to assemble thousands of BUSCO single-copy genes from metagenomic reads (2x150bp). The target file is amino acids, and we set the coverage cutoff for spa…