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gagneurlab/FRASER-2.0-analysis #2

found not dataset

Hi Developer! I add "options(buildtools.check = function(action) TRUE)" so that I successed install However, snakemake does not work. I was told that I don't have the required data set. Mayb…

knakamura6222053 updated 8 months ago
1
DarrianTalamantes/Mapping_and_QTL #1

Mapping Project

# 2024 phenotype data ## 2024 phenotype data Scatter plot of Alkaloids vs Delta CT (both normalized and OG data). ![RplotAlkaloid_vs_DeltaCTadj_2024](https://github.com/DarrianTalamantes/Mappin…

DarrianTalamantes updated 1 day ago
13
snakemake/snakemake #877

"Resuming incomplete job" when it shouldn't

**Snakemake version** 5.31.1 **Describe the bug** Often for snakemake runs with 10's of 1000's of jobs, snakemake will try to resume jobs such as: ``` Resuming incomplete job 10715 with e…

nick-youngblut updated 3 years ago
2
snakemake/snakemake #303

Incompatible with singularity installed through conda

### Snakemake version 5.13.0 ### Describe the bug Singularity installed through conda may have not-traditional version numbers. For example: ``` conda install -c conda-forge singularity=3…

haizi-zh updated 4 years ago
2
SiWolf/SCORE #5

Conda not able to install packages labeled 'broken'

Thanks for the nice software! When installing the dependencies through Snakemake + Conda, some YAML files refer to packages labeled 'broken'. To the best of my knowledge, these cannot be installed…

boasvdp updated 3 years ago
1
lark-parser/lark #1397

Import lark grammar written in one python project into anoth…

**What is your question?** How do I import lark grammar written in one python project into another. E.g. project A has `A/grammar.lark` file project B can import A But ``` // file called B/…

manjrekarom updated 3 months ago
6
snakemake/snakemake #958

KeyError and CreateRuleException while using modifying use s…

**Snakemake version** 6.1.1 and git version 6.1.1+7.g5349f2a4 **Describe the bug** Errors are thrown if we have modified rules made using the `use rule ... as ... with:` syntax in a Snakemake mo…

ashwinvis updated 2 years ago
2
snakemake/snakemake #315

Double underscores break dynamic wildcards parsing

**Snakemake version** `5.13.0+14.g1804ad75` **Describe the bug** Placeholders separated by double underscores (e.g., `data.{sample}__{id}.csv`) are not parsed correctly in case of dynamic workflo…

JackCaster updated 4 years ago
1
snakemake/snakemake #843

generate unit test with snakemake but missing quote for conf…

snakemake 5.31.1 I ran my workflow with success a first time ``` snakemake --configfile config/config_test_rapidrun.yaml -s Snakefile --cores 8 --use-conda ``` and then I ran again my workflow …

Grelot updated 3 years ago
4
jiarong/VirSorter2 #13

Configuration for virsorter 2 with LSF ?

Hi Jiarong et al, It was good to see that internally there is a snakemake workflow, so I have tried it already on our HPC cluster with LSF queueing – works happily on a small test dataset. Do …

michalogit updated 4 years ago
4

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1000+ results for snakemake

1000+ results
for snakemake