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COMBINE-lab
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cuttlefish
Building the compacted de Bruijn graph efficiently from references or reads.
BSD 3-Clause "New" or "Revised" License
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KMC compilation error when compiling from source
#45
Sawwave
opened
1 day ago
2
separate program to transform fasta output to GFA output
#44
jianshu93
closed
1 week ago
0
Merge develop into piscem-hotfix
#43
rob-p
opened
2 months ago
0
How to output maximal unitigs?
#42
dwpeng
closed
3 months ago
2
Using $TMPDIR as default temp working folder?
#41
tseemann
opened
3 months ago
2
BUILD_COMMAND in CMakeLists.txt
#40
wdlingit
closed
5 months ago
3
update to KMC fork to eliminate patching and allow compilation on AMD w/SIMD
#39
ggraham
opened
6 months ago
3
arm64 Cuttlefish on bioconda
#38
aryakaul
opened
10 months ago
4
Reduced GFA output --> GFA1/GFA2 Output
#37
aryakaul
opened
11 months ago
1
Unitigs are missing kmers
#36
sebschmi
closed
11 months ago
4
Complemental k-mers are not handled correctly
#35
sebschmi
closed
11 months ago
5
Cuttlefish 1 - Color by file instead of record
#34
aryakaul
closed
11 months ago
3
Fix: assert kmer len >= and not == on L283
#33
theJasonFan
closed
1 year ago
0
Different version when installing through Conda?
#32
iamdeaardappel
closed
11 months ago
3
Would you mind providing a more detail on assembly ?
#31
deyuanyang
opened
1 year ago
2
infinite loop
#30
rchikhi
closed
1 year ago
3
Multiple different crashes (CThreadCancellationException and Cannot open temporary file)
#29
rlorigro
closed
1 year ago
10
Patch step error while linking library with CMake
#28
rlorigro
opened
1 year ago
3
is there a way to get the kmer counts of the kmers in the produced unitigs?
#27
shokrof
opened
1 year ago
4
merge master changes back to dev
#26
rob-p
closed
1 year ago
0
Output polyN stretches in `.cf_seq` file
#25
theJasonFan
closed
1 year ago
6
Building on Apple M1 / M2 Silicon
#24
theJasonFan
closed
1 year ago
0
Using Cuttlefish2 with Corrected Long Reads
#23
jwalewski
closed
1 year ago
2
Extra large kmer
#22
apaytuvi
opened
1 year ago
6
tools for the result of cuttlefish?
#21
shenweima
closed
3 months ago
1
docker image?
#20
shenweima
closed
1 year ago
2
Potential arm support?
#19
michaelbarton
opened
1 year ago
3
exception when trying to use the software
#18
PandorasRed
closed
2 years ago
3
problem with installing cuttlefish from the source
#17
PandorasRed
closed
2 years ago
8
Develop
#16
jamshed
closed
2 years ago
0
Getting "Error while writing to temporary file 0" error
#14
shokrof
closed
2 years ago
5
KMC files are written to the current directory even when a separate working directory is given
#13
jnalanko
closed
2 years ago
2
Building fails for k = 13 or larger
#12
jnalanko
closed
2 years ago
3
gzipped input?
#11
ctb
closed
2 years ago
2
Cuttlefish 2.0 runable?
#10
rickbeeloo
closed
2 years ago
5
Fix GFA1 path overlaps, revisited
#9
jurikuronen
closed
2 years ago
7
Fix GFA1 path overlaps
#8
jurikuronen
closed
2 years ago
1
Cuttlefish as C++ API / header library?
#7
Krannich479
opened
3 years ago
2
Incorrect link between node and contigs?
#6
rickbeeloo
closed
3 years ago
8
question on graph compaction
#5
kevyin
opened
3 years ago
1
Advice to do this for a large collection of genomes
#4
rickbeeloo
closed
2 years ago
4
Empty GFA (and temporary file delete error)
#3
rickbeeloo
closed
3 months ago
6
gfa visualization
#2
EA2106-Universite-Francois-Rabelais
closed
3 years ago
6
Develop
#1
rob-p
closed
4 years ago
0