-
Hello,
I recently read your paper " Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR".And I am trying to implemen…
-
Hi, I'm testing with a clinical data set of a tumor patient. I noticed that when feeding a preprocessed and upscaled `Diffusion.nii.gz` file and it's `bvecs/bvals`, the results are slightly better (af…
-
Dear DKFZ,
Thanks for the great repo.
I want to use this tool for off-line argumentation on Win10, and I follow the code in [examples/brats2017](https://github.com/MIC-DKFZ/batchgenerators/tree/…
-
Hi,
I was curious as to how you have selected sub-image patch size of [19, 144, 144, 4]? Is it based on cross-validation? Further as already asked here: (https://github.com/taigw/brats17/issues/20)…
-
Hello!
I have created a .h5 file with the _LiTS_ Dataset with shape (140, 2, 128, 128, 128), with 140 volumes, 2 labels, a scan and a mask for each, 128 slices, and 128x128 px size. I adjusted the he…
-
Hi,
I read your paper _H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes_ and find some inconsistencies between the network structure in your paper and the r…
ghost updated
5 years ago
-
## ESIP Member Organization
CSISS/LAITS, George Mason University
Alaska Ocean Observing System (AOOS) and Axiom Data Science
## Mentors
Ziheng Sun
Jesse Lopez
## Project Ideas
Ag-Net: building …
-
I'm working with multiple samples per person, and want to identify CNV events in common between samples. I started by just trying to identify CNV segment calls that were in common. One problem with …
-
Hello,
I am observing erroneous segmentation on the BAF plots. Some of the segments also don't seem to align well with the average BAF values. Is BAF segmentation performed independently from the l…
-
As discussed in #142, to facilitate evaluating predicted segmentation images, it would make sense to implement metrics that compare the predicted images with the ground truth in order to compare appro…