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- [x] Archive [code_docker_lib](https://github.com/RTIInternational/code_docker_lib). All updates should be in this repo. ` should be used as the new source of truth.
- [x] Add missing docker images.…
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Would/could this work or do `summarize` and `zip` need to run separately?
```
genome-grist run summarize zip
```
It would be nice to run in one line :)
Update - right, so combining doesn't…
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**Is your feature request related to a problem? Please describe.**
We have been trying (using our forum) to be the place where users of workflows can post questions. It may make more sense for us to a…
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## Feature Request
### Desired behaviour
Please add support for the Cromwell -o option and a newer release of Cromwell (30.2)
~~o,~~ -options Workflow options file.
and potentially the other o…
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I'm a novice. How can I compile and package this plug-in and what software should I use?
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The input xxxx.g.vcf.gz file was generated using the BAM to VCF Cromwell pipeline: [https://github.com/broadinstitute/wdl-runner](url)
When I ran vcf_to_bq without --run_annotation_pipeline - it r…
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it can easily be done like this:
``` java
ChunkProviderClient provider = (ChunkProviderClient) mc.theWorld.getChunkProvider();
int viewDist = mc.gameSettings.renderDistanceChunks;
viewDist *= 2;
view…
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In 'merge_and_plot_qc.py' dump the metadata to something like "initial_metadata.csv"
move post- metadata dump from 'annotate_cells.py' to 'add_harmony.py'
implications:
- [ ] output_metadat_f…
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I want to only output command lines in shell script , Is there any way that i can implement this?
Thank you
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Hi,
I am trying to create two task. MarkDuplicates followed up Samtools index of that MarkDuplicates. Both from separate dockers. The issue I think is that when samtools indexes a bam file it does…
ghost updated
3 years ago