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googlegenomics
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gcp-variant-transforms
GCP Variant Transforms
Apache License 2.0
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subnetwork flag to use network/subnet outside the project where dataflow runs in
#720
bujiazhang
opened
5 months ago
0
support for newer version than python 3.7
#719
mizue31g
opened
1 year ago
0
VCF to BQ via docker keeps failing
#718
mkahn5
closed
2 years ago
1
AnnotateShards not producing **vep_output.vcf
#717
KevinDuringWork
closed
2 years ago
3
release 0.11.0
#716
lawrenae
closed
2 years ago
0
Sample optimized tables
#715
kbtian
closed
2 years ago
0
Chore/beam 2.36.0
#714
lawrenae
closed
2 years ago
0
Pipline mode flag
#713
kbtian
closed
2 years ago
0
dont just build the containers sequentially
#712
lawrenae
closed
2 years ago
0
Feature/custom worker service account
#711
lawrenae
closed
2 years ago
0
custom worker service account documentation
#710
lawrenae
closed
2 years ago
0
Fix yaml.load error
#709
kbtian
closed
2 years ago
0
removing travis CI usage in favor of Cloud Build
#708
lawrenae
closed
2 years ago
0
Feature/custom dataflow container
#707
lawrenae
closed
2 years ago
0
flatten null repeated column
#706
dbaid
opened
2 years ago
0
unable to pull from pypi.org when running under VPC SC
#705
lawrenae
closed
2 years ago
0
pyYAML 6.0 incompatability
#704
james-lawlor
closed
2 years ago
1
The MISSING_GENOTYPE_VALUE value of -1 can conflict with genotype values that are in a VCF (scalar vs. list)
#703
adaykin
opened
2 years ago
0
Update documentation for custom subnets
#702
moschetti
closed
2 years ago
0
Adding a check in the less than method for the VariantCall class to ensure that in cases where there is a mix of arrays and scalar values that the comparison still works.
#701
adaykin
opened
2 years ago
0
Add presentation and update links
#700
moschetti
closed
3 years ago
0
VCF to BQ Timeout Issue
#699
adaykin
closed
2 years ago
4
Update VEP runner to use Life Sciences API beta & VEP 104
#698
moschetti
closed
2 years ago
3
update subnetwork flag documentation
#697
rcowin-gcp
closed
3 years ago
1
Network parameter not being read
#696
abalter
opened
3 years ago
27
move_hom_ref_calls python error
#695
james-lawlor
opened
3 years ago
1
off by 1 error?
#694
bradmonk
closed
3 years ago
3
Add an option to supply custom_sample_info_table.
#693
tneymanov
closed
3 years ago
0
Add an option to filter hom_ref_calls.
#692
tneymanov
closed
3 years ago
0
Use VEP version as docker image tags
#691
samanvp
closed
3 years ago
0
Revert "Set 1-based coordinate as our default"
#690
samanvp
closed
3 years ago
0
Drop hom_ref calls in sample optimized tables
#689
samanvp
closed
3 years ago
2
Fix query 2.1 and update notebook name
#688
moschetti
closed
3 years ago
0
Pass service account to the workers created for VEP annotation
#687
samanvp
closed
3 years ago
0
Change the default value of use_1_based_coordinate to False
#686
samanvp
closed
3 years ago
1
Update query 2.3
#685
samanvp
closed
3 years ago
0
Add Query: Find mutation count across chromosome
#684
tsa87
closed
3 years ago
3
Fix typos and update narrative in gnomad sample queries notebook.
#683
mbookman
closed
3 years ago
0
Add location flag to documentation
#682
moschetti
closed
3 years ago
0
Update gnomAD Colab
#681
samanvp
closed
3 years ago
0
Add link to sample queries from annotation docs
#680
moschetti
closed
3 years ago
0
Add an option to disable sharding
#679
arostamianfar
opened
3 years ago
0
Add gnomAD sample queries notebook
#678
moschetti
closed
3 years ago
2
Add an option to include call name in BQ table.
#677
tneymanov
closed
3 years ago
0
Increase _MAX_NUM_REGIONS
#676
samanvp
closed
3 years ago
0
Enable users to set --service_account
#675
samanvp
closed
3 years ago
1
Fix google-cloud-storage import.
#674
tneymanov
closed
3 years ago
0
Release 0.10.0 version of Variant Transforms.
#673
tneymanov
closed
3 years ago
0
Fix venv docker issue.
#672
tneymanov
closed
3 years ago
0
Update Beam
#671
samanvp
closed
3 years ago
0
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