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googlegenomics
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gcp-variant-transforms
GCP Variant Transforms
Apache License 2.0
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Fix README.md to remove dev update and fix broken URL.
#670
tneymanov
closed
4 years ago
0
Push Python 3 changes to master branch.
#669
tneymanov
closed
4 years ago
0
Update Python 3 related commands in docs.
#668
tneymanov
closed
4 years ago
0
Enabling --save_main_session pipeline option in our pipelines.
#667
tneymanov
closed
4 years ago
1
Fix deploy_and_run_tests.sh to be locally runnable.
#666
tneymanov
closed
4 years ago
0
Update the VEP release used for annotations
#665
mbookman
closed
2 years ago
1
Apply final Python 3 changes over VT repository.
#664
tneymanov
closed
4 years ago
0
Large threshold reduce to 500
#663
samanvp
closed
4 years ago
0
Document how to use Dataflow Flexible Resource Scheduling to save on Cloud cost
#662
mbookman
opened
4 years ago
0
Add a flag to omit homozygous reference calls on vcf_to_bq import
#661
mbookman
opened
4 years ago
0
Add a flag to preserve the call.name field
#660
mbookman
closed
4 years ago
9
Add a flag to specify the "pipeline mode" (SMALL, MEDIUM, or LARGE)
#659
mbookman
closed
2 years ago
7
merge_header pipeline should not run when --representative_header_file is set
#658
mbookman
opened
4 years ago
0
Add Pysam setup retries to make COST_OPTIMIZED dataflow more robust.
#657
mbookman
closed
4 years ago
3
Set output-interval in pipelines_runner.sh to 60s.
#656
mbookman
closed
4 years ago
0
vcf_to_bq running with --run_annotation_pipeline fails to find **_vep_output.vcf files
#655
TomGardner
opened
4 years ago
2
Migrate Python3 options subfolder and entrypoints
#654
tneymanov
closed
4 years ago
0
Migrate Python3 transforms package.
#653
tneymanov
closed
4 years ago
0
Migrate the rest of Libs Package.
#652
tneymanov
closed
4 years ago
0
Add timestamps to the logging messages
#651
samanvp
opened
4 years ago
0
Update `vep_runner.py` to use Life Sciences `v2beta` API
#650
mbookman
closed
2 years ago
0
Add location flag docs
#649
moschetti
closed
3 years ago
1
Add Life Sciences API location flag
#648
samanvp
closed
4 years ago
1
Migrate subdirectories in libs to Python 3
#647
tneymanov
closed
4 years ago
0
Migrate beam_io package to Python3.
#646
tneymanov
closed
4 years ago
0
Apply initial setup changes for Python3 migration.
#645
tneymanov
closed
4 years ago
0
Move Avro related items out of bigquery_util.py
#644
samanvp
opened
4 years ago
0
Proper use of const values defined in vcf_header_io.py
#643
samanvp
opened
4 years ago
0
P3 Migration
#642
samanvp
closed
4 years ago
0
Sharding config with "Partition Range Start"
#641
samanvp
opened
4 years ago
0
Store VCF headers along with Avro files
#640
samanvp
opened
4 years ago
0
New Schema Release
#639
samanvp
closed
4 years ago
1
Replace RemoveDuplicates with Distinct
#638
samanvp
closed
4 years ago
0
Modify bq_to_vcf integration tests to verify default 1-based coordinate
#637
samanvp
opened
4 years ago
0
Add --use_1_based_coordinate option to bq_to_vcf pipeline.
#636
tneymanov
closed
4 years ago
0
Annotation pipeline and 1_based coordinate
#635
samanvp
closed
4 years ago
0
Update flag doc
#634
samanvp
closed
4 years ago
0
Set 1-based coordinate as our default
#633
samanvp
closed
4 years ago
0
Missing edits from #631
#632
samanvp
closed
4 years ago
0
Add vcf_to_bigquery doc page
#631
samanvp
closed
4 years ago
0
Dataflow workers use private IP addresses
#630
samanvp
opened
4 years ago
3
Update Platinum dataset
#629
samanvp
opened
4 years ago
0
Revert "Modify how we send subnetwork to pipelines-tools (#627)"
#628
samanvp
closed
4 years ago
1
Modify how we send subnetwork to pipelines-tools
#627
samanvp
closed
4 years ago
2
Use SSD for large workers
#626
samanvp
closed
4 years ago
0
Update Beam
#625
samanvp
closed
4 years ago
0
Update docs ahead of new schema launch
#624
samanvp
closed
4 years ago
1
Adding sub network and private address as options to the gcp-variant-transforms container
#623
bgood
closed
4 years ago
1
Modify our docker entrypoint
#622
samanvp
closed
4 years ago
1
Add a new sharding config with fixed partition range end values
#621
samanvp
closed
4 years ago
0
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