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Whenever we trigger the GEO importer for bulk RNA-seq experiments, the freshly converted MAGE-TAB file (with name E-GEOD-xxx.idf.txt) gets copied to the $ATLAS_PROD/GEO_import/GEOD/E-GEOD-xxx/ folder …
anjaf updated
3 years ago
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- version of RNA-Bloom with `java -jar RNA-Bloom.jar -version`
```
root@0d73be8b2e5c:/data/output# rnabloom -version
RNA-Bloom v1.3.1
Ka Ming Nip, Canada's Michael Smith Genome Sciences Centre, B…
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In working on #3, I have now reached the point where some decisions about mapping strategies going forward could be made.
The current implementation of indexing (soon to be filed as a PR) creates …
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Hi, I am working through the intro to scRNA-seq integration and I want to look at gene expression between my two samples but without doing cell type annotation. Is there a way to bypass the feature as…
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Hi,
I noticed kallisto only outputs transcript-equivalence classes when aligning single-cell RNA-seq.
I’d be very nice if you’d also output them (maybe with an optional tag) when aligning bulk RNA-s…
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### Project short name:
POPVaginalWallAtlas
### Primary Wrangler:
@ESapenaVentura
### Secondary Wrangler:
@Wkt8
### Associated files
* Google Drive: https://drive.google.com/drive/folders/1p…
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https://mp.weixin.qq.com/s/KrlxvJiLibE0RTKOB44t1w
ixxmu updated
2 years ago
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Hi!
Great package! I would like to run Bisque with some public bulk RNA-seq datasets that are, unfortunately, only available as CPM. Is there any way I can feed it the CPM normalized data and skip …
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https://mp.weixin.qq.com/s/v-RMh3HKMT_mfIhyS91d_g
ixxmu updated
2 years ago
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This command is producing the following error:
cat results1.csv | heatmap.r > results1.pdf
Error: package or namespace load failed for 'gplots' in dyn.load(file, DLLpath = DLLpath, ...):
unable …