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Using the tool ``pydocstyle`` (installed with ``pip install pydocstyle``), or its flake8 plugin equivalent (installed with ``pip install flake8-docstring``), we can count missing docstrings:
```
$…
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Dear David,
I recently started to test Orthofinder for large scale comparative genomics in bacteria. So far so good, nevertheless I got few orthogroups that contain more than 20 proteins per strain…
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- [ ] @maxkfranz Manually review the results of the grounding service
- [ ] Are the results comparable to the raw Uniprot requests?
- [x] Determine to what degree the aggregate service functiona…
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centrosome cycle
https://www.ebi.ac.uk/QuickGO/term/GO:0007098
has
GO:0007098 | centrosome cycle | Never in Taxon | 4751 | Fungi
but the descendant
GO:0046604 positive regulation of mit…
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Hi, I really liked your ellegant code and smooth integration process, however, after all steps executed correctly, I've got an empty output bed file for CNVs detection with just a heading. I used 35 s…
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Hi,
I've used the following command:
`java -jar -Xmx8g fgbio-0.7.0.jar FilterConsensusReads -i Panel-STHT-U226_sorted_umi_sortedpicard_mate_grouped_consensus.bam -o /Panel-STHT-U226_sorted_umi_s…
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Running the last version crashes in the get_software_versions function. There are also a couple of warnings.
```
nf-core/rnaseq : RNA-Seq Best Practice v1.5dev
==================================…
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- [x] Rseqc
- [x] multiqc
- [x] Preseq
Will skip:
- FeatureCounts
- dupRadar
- MIP/qccollect
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> ...in-house WES testing identified a missense variant in the IFT140 gene which would fit with the diagnosis if a second variant in this gene was found. Manchester have detected large intragenic dup…
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I have successfully annotated my vcf file using a local installation of variant effect predictor (VEP). However, the filtering doesn't work. E.g. the command
`filter_vep -i vep.test.vcf.gz -filter …
matmu updated
5 years ago