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Hello,
Sorry for asking many questions.
I am very interested in **applying your tool to my work**, hoping to better understand your tool's output.
I am looking at a "cycles.txt" file which (I …
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Hi
I am working with Roche Lightcycler 96 files. When I open lc96p files straight from the thermal cycler there is no problem importing these files. However, when opening in lightcycler software and …
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When processing data with picard, many changes are introduced and one does not remember of them all (even more if the data is received without info).
Is there a way to systematically add a @PG line…
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Data Carpentry workshops are for any researcher who has data they want to analyze , and no prior computational experience is required. This hands-on workshop teaches basic concepts, skills and tools f…
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```bash
...
libhts.a(bgzf.o): In function `inflate_block':
/share/tools/ngs-tools/BMFtools/htslib/bgzf.c:302: undefined reference to `inflateInit2_'
/share/tools/ngs-tools/BMFtools/htslib/bgzf.c:3…
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I like the dada2 approach and I think it greatly enhances how we evaluate NGS data.
I understand how the dada2 algorithm makes unsupervised "OTUs"/sequence variants or whatever we call them. The pr…
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Seems to be related to a directory not being created quickly enough ?
Indeed, when we start again (directory is now created), there is no errors
Solution: remove temp directory creation and use a…
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During the discussions at the Amsterdam event (http://pardot.agilent.com/NGS), Lynn Schriml, @kkrysiak and I talked about creating a style guide to help new curators write appropriate short texts tha…
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Zaal, Zhongwu and all;
We're seeing some cases where VarDict has higher than expected memory usage on relatively small regions. Here is a self contained example over a 1.5Mb region where VarDict memo…
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Right now, looper is still checking for input file existing based on the (soon to be outdated) "data_source" and its derived "data_path" attributes. Now with derived columns, any column could be the i…