pepkit peppy issues - Githubissues

pepkit / peppy

Project metadata manager for PEPs in Python

https://pep.databio.org/peppy

BSD 2-Clause "Simplified" License

37 stars 12 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

attempt to replace pandas with polars, this is untested

#487 donaldcampbelljr opened 6 days ago
0
Replace `pandas` with `polars`

#486 nleroy917 opened 1 month ago
0
v0.40.2

#485 donaldcampbelljr closed 1 month ago
1
Dev 459 sample table index

#484 donaldcampbelljr closed 1 month ago
1
Should Peppy infer a project name from a csv PEP? If so, from where?

#482 donaldcampbelljr opened 3 months ago
0
Should appending sample modifiers override column values in sample.csv?

#481 donaldcampbelljr opened 4 months ago
1
Rename CONSTANT_KEY to APPEND_KEY

#480 donaldcampbelljr opened 4 months ago
0
remove tests and docs from manifest.

#479 nsheff closed 3 months ago
0
Tests directory incorrectly included in package installation

#478 jlumpe closed 1 month ago
5
Metadata standardization models

#477 nsheff closed 1 month ago
2
peppy creates projects with no sample name column

#476 nsheff opened 4 months ago
3
Update python-publish.yml

#475 khoroshevskyi closed 5 months ago
0
Update python-publish.yml

#474 khoroshevskyi closed 5 months ago
0
Using v0.40.0 can create peppy project without sample names.

#473 donaldcampbelljr opened 5 months ago
0
Release 0.40.1

#472 khoroshevskyi closed 5 months ago
0
add `__eq__` method to peppy.Sample

#471 khoroshevskyi opened 6 months ago
0
Fix missing release date

#470 nsheff closed 6 months ago
0
Fixed docs build

#469 khoroshevskyi closed 6 months ago
0
add readthedocs config

#468 nsheff closed 6 months ago
0
Release 0.40.0

#467 nsheff closed 6 months ago
0
Updated initiation object method with class methods

#466 khoroshevskyi closed 6 months ago
0
restructure peppy constructor function (init)

#465 khoroshevskyi opened 7 months ago
4
Env variables in config file are not expanding

#464 donaldcampbelljr closed 6 months ago
2
Cannot access pep.config.output_dir, must use pep.config["output_dir"]

#463 donaldcampbelljr closed 6 months ago
4
should pephubclient become part of peppy to simplify things?

#462 donaldcampbelljr opened 7 months ago
2
should it be easy to create a peppy.Project from a pandas dataframe?

#461 donaldcampbelljr closed 6 months ago
4
peppy.Project didn't have a clear way to create the project from csv, either, once I had that

#460 donaldcampbelljr opened 7 months ago
1
the project missing `sample_name`, but with `sample_table_index` set correctly, cannot run in looper

#459 donaldcampbelljr closed 1 month ago
9
Make a peppy.Project from a sample yaml file

#458 donaldcampbelljr closed 6 months ago
3
Streamlining user interface

#457 nsheff closed 6 months ago
2
added reduce functionality to project

#456 khoroshevskyi closed 7 months ago
0
Add pickling (serializing an object) to Project

#455 khoroshevskyi closed 6 months ago
1
Add test that will check if pickling works well

#454 khoroshevskyi closed 6 months ago
0
Duplicated error message upon project load

#483 nsheff opened 10 months ago
4
Release 0.35.7

#453 khoroshevskyi closed 11 months ago
1
from_dict method does not set correctly sample and subsample indexes

#452 khoroshevskyi closed 11 months ago
0
Add `numpy` explicitly to requirements.

#451 mknorps closed 6 months ago
1
v0.35.6

#450 khoroshevskyi closed 1 year ago
0
Add orient argument to `to_dict` method

#449 khoroshevskyi closed 1 year ago
0
Fixed #447 (Removal of attmap dependency)

#448 khoroshevskyi closed 11 months ago
0
Remove attmap dependency

#447 nsheff closed 6 months ago
7
Empty sample file fix

#446 ayobi closed 11 months ago
0
added handling of empty sample file

#445 ayobi closed 1 year ago
0
If 'annotation_sheet.csv' is without samples, throws 'NoneType' error

#444 ayobi closed 11 months ago
0
Change `from_dict()` and `from_pandas()` from instance method to class method.

#443 khoroshevskyi closed 6 months ago
0
`to_dict(extended=True)` is producing dict with incorrect key name `subsample_dict`

#442 khoroshevskyi closed 1 year ago
0
Release v0.35.5

#441 nsheff closed 1 year ago
0
Fix bug with custom sample id. See #435

#440 nsheff closed 1 year ago
1
Duplicate sample speed

#439 neil-phan closed 1 year ago
4
from and to dict improvements

#438 khoroshevskyi closed 1 year ago
1