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pepkit
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peppy
Project metadata manager for PEPs in Python
https://pep.databio.org/peppy
BSD 2-Clause "Simplified" License
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Fix bug with custom sample id. See #435
#440
nsheff
closed
1 year ago
1
Duplicate sample speed
#439
neil-phan
closed
1 year ago
4
from and to dict improvements
#438
khoroshevskyi
closed
1 year ago
1
Add functionality that supports non private keys in dictionary in `from_dict` fucntion
#437
khoroshevskyi
closed
1 year ago
1
Performance idea: find duplicate samples more efficiently
#436
nsheff
closed
1 year ago
2
sample_modifiers applied to subsamples
#435
johnyaku
closed
1 year ago
12
Imports: documentation unclear
#434
johnyaku
closed
1 year ago
2
Request: Enable local reference for pep_version YAML-file
#433
KuechlerO
closed
1 year ago
1
Performance idea: generator for object-style representation
#432
nsheff
opened
1 year ago
3
Activating amendment overwrites the full original sample configuration
#431
Redmar-van-den-Berg
closed
1 year ago
5
Remove old logmuse dependency declaration
#430
vreuter
closed
1 year ago
0
Remove logmuse dependency?
#429
vreuter
closed
1 year ago
2
Add link to the package on PyPI
#428
vreuter
closed
1 year ago
2
Automatic deletion of merged branches?
#427
vreuter
closed
1 year ago
2
switching print to sys.stderr in rich progressbar
#426
khoroshevskyi
closed
1 year ago
1
disabled progress bar
#425
khoroshevskyi
closed
1 year ago
4
`Project.from_pandas()` creates duplicate `sample_name` column in sample table
#424
nleroy917
closed
1 year ago
1
Release 0.35.3
#423
khoroshevskyi
closed
1 year ago
2
nan value appearing in return of to_dict when project was initiated from pandas
#422
khoroshevskyi
closed
1 year ago
0
Add is_private attribute
#421
rafalstepien
closed
1 year ago
1
fix: redirect progress bar to stderr to accommodate Snakemake
#420
matinnuhamunada
closed
1 year ago
0
Rich progress display breaks Snakemake DAG visualization
#419
matinnuhamunada
closed
1 year ago
2
Remove creating `NaN`s in `to_dict` method
#418
rafalstepien
closed
1 year ago
1
`peppy.Project.to_dict()` creates unwanted NaN values
#417
rafalstepien
closed
1 year ago
0
Pandas frame.append method is deprecated
#416
matinnuhamunada
closed
1 week ago
3
Release v0.35.1
#415
rafalstepien
closed
1 year ago
1
Fixed #412
#414
khoroshevskyi
closed
1 year ago
0
Remove artifact converters
#413
khoroshevskyi
closed
1 year ago
1
Remove artifact converters
#412
rafalstepien
closed
1 year ago
1
use HTTPS links
#411
fabianegli
closed
1 year ago
1
Export `PEP_LATEST_VERSION` in `__init__.py`
#410
nleroy917
closed
1 year ago
1
Apply bugfix
#409
rafalstepien
closed
1 year ago
10
Peppy does not create correct list of `Sample()` objects stored in `self._samples`
#408
rafalstepien
closed
1 week ago
3
v0.35.0
#407
khoroshevskyi
closed
1 year ago
0
Incorrect key names in preoduced dict by to_dict()
#406
khoroshevskyi
closed
1 year ago
0
changes in the way of initialization Project from dict and pandas df
#405
khoroshevskyi
closed
1 year ago
11
Fixed #401
#404
khoroshevskyi
closed
1 year ago
0
400 peppy does not initialize correctly
#403
rafalstepien
closed
1 year ago
0
to_dict() and from_dict() optimization!
#402
khoroshevskyi
closed
1 year ago
0
from_pandas() function does not initialize '_subsample_df' variable
#401
khoroshevskyi
closed
1 year ago
0
`peppy` does not initialize correctly, when there is sample table index name other than default
#400
rafalstepien
closed
1 week ago
5
Feature request: `peppy.Project.config.to_yaml()` doesn't accurately reproduce original config file
#399
nleroy917
closed
6 days ago
3
Release v.0.34.0
#398
rafalstepien
closed
1 year ago
0
Initializing peppy object from pandas
#397
khoroshevskyi
closed
1 year ago
1
Adjust peppy to handle different read types for the same sample
#396
rafalstepien
closed
1 year ago
2
Allow a merged sample where some attributes are missing values
#395
rafalstepien
closed
1 week ago
3
Add python 3.10 to setup file
#394
khoroshevskyi
closed
1 year ago
1
Allow null subsample tables in `peppy.Project`
#393
nleroy917
closed
6 days ago
1
Sample table as input cause does not initialize all object variables
#392
khoroshevskyi
closed
1 year ago
1
Update sample table parsing, add `Project.remove_samples` (2)
#391
nleroy917
closed
1 year ago
5
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