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Copied MONDO for biopsy_by_location pattern, so ended up using RO_0004026 Disease has location.
Thinking of changing to RO_0001025 'located in' but not sure.
@matentzn What do you think? (No hu…
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`remove` and `filter` include a `--trim ` option to determine which axioms are removed/filtered. The idea is to trim (or not) any "dangling" references.
In the implementation we build a set of targ…
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Placeholder for now. Briefly discussed ways of/reasons for modularizing the annotations. A common solution is JSON-LD:
https://json-ld.org/
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Following from our conversation with Ada and Joanna on 6/10/19 we need to review our handling of the OMIM susceptibility terms to determine which ones should be converted to 'disease #'.
We may wan…
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Hi,
The object properties here are no longer supported:
https://github.com/CommonCoreOntology/CommonCoreOntologies/blob/master/BFO%20Version/ro.owl
For more background see
https://github.com/…
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Pattern as of June 10, 2019
```
pattern_name: abnormallyDecreasedNumberOfAnatomicalEntity
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/http://purl.obolibrary.org/obo/upheno/patte…
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Pattern location as of May 8, 2019:
http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDecreasedRateOfMolecularFunction.yaml
Pattern as of May 8, 2019:
```
pattern_name: abnormallyDecr…
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Branching off from the designated ticket #330 as that has drifted from the original "absent" pattern discussion.
Pattern location as of May 9, 2019:
http://purl.obolibrary.org/obo/upheno/patterns-…
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It's standard practice to represent existentials as simple triples in triplestores, as querying the standard representation is awkward. Currently people do this in different ways.
We have proposed …
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Branching off from the designated ticket #330 as that has drifted from the original "absent" pattern discussion.
Pattern location as of May 9, 2019:
http://purl.obolibrary.org/obo/upheno/patterns-…