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I’m trying to use Localized Reconstruction plugin in Scipion 3. I imported particles from Relion 3.1, defined subparticles, filtered them and extracted with a new box size. Everything worked seemingly…
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I have extracted sub particles (box 256) from particles (box 1024) using 'localrec - extract subparticles' protocol. When I run a Relion protocol with these (e.g. 'relion - reconstruct'), wrong _rlnIm…
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Hello,
First of all, thank you so much for this library, it opens up many possibilities to analyze results from RELION.
I can load `run_it???_data.star` and `run_it???_model.star` without any pr…
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From Marcos Gragera
Hi all, I am having this error message with relion3.1 in scipion3 (devel branch and git pull with the latest version):
```
00001: RUNNING PROTOCOL -----------------
0…
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Hi,
I have a dataset of 3D particles and I want to do sub-tomogram averaging using Relion 2.1.
Since those 3D particles may not be normalised in a way Relion prefers, I am trying to normalise them…
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Hi all,
We have relion 3.0 and we get this error:
ERROR:
No orientation was found as better than any other.
A particle image was compared to the reference and resulted in all-zero
weights (…
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I had a strange error while compiling xmipp due to the cuda version. I don't want cuda programs to run, I just need to compile.
Here is the error:
```
(base) bash-4.2$ ./xmipp
Configuring -----…
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This way, it will be closer to the implementation in Relion GUI. Moreover, it is true that almost in all cases that we use 'scipion - extract coordinates', we run an extract after it. So, we are alway…
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Hello,
I am trying to align ~9000 movies in eer format with the latest commit of Relion (I also tried with the previous commit). The job runs fine for a while, but it is always crashing at some po…
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Yesterday in a remote course we had several case were
were creating a project name with spaces.
This caused an error later on in Flexalign code. I know we could blame flexalign for this and I'l…