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Hi there,
I've been trying for a few weeks now to get STAR-fusion to work on usegalaxy.org.
I've tried two ways: 1. running RNA-STAR first, and then using the output for STAR-fusion, and 2. Lett…
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Dear all,
We are analyzing some patients with this fantastic program and trying to learn the meaning of the results we obtain. On the graph we obtain a disperse point pattern (see image below):
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**User story**
As NPG we would like an extra "Contaminated Human Data Access Group" field on the New Study Page so that access to the "likely human" read data that NPG already creates separately.
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https://mp.weixin.qq.com/s/zbQbrMDTg0nw9J_inPuL7A
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I noticed that kazu changed the input text. I'm curious how it made this mistake and how to prevent it.
To recreate: I passed in a text block that contained the text "The CFIm25 deletion leads …
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Hi Akdes,
I have been working my way through the pipeline and have run into an issue that I have been trying to work through the past few days with no luck.
I have no issue with all the preceding …
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Hello, I am interested in starting using TRUST4, and was wondering what is the best approach to run it on SMARTer data, in terms of parameters, pre-processing, etc.
I run a subset of 100K paired-en…
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- Open access data can be used by the QC WG, Mcgill has downlaoded this data and done some processing and think other folks can use this.
- We will stage this data in Object storage in Collab. We wa…
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Using `sc_exon_mapping` as an example: it would be convenient to be able to supply a `GRanges` object directly as `annofn=`, especially in situations where some editing of the annotation files are nec…
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Hello again!
Trying to run egapx on local machine, genome and rna reads are on server, getting an error:
```
ERROR ~ Error executing process > 'egapx:rnaseq_collapse:run_rnaseq_collapse (1)' …
zilov updated
3 months ago