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ncbi
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egapx
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
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ERROR ~ Error executing process > 'egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype'
#61
bismarck1008
opened
20 hours ago
3
egapx:annot_proc_plane:annot_builder:annot_builder_run: error
#60
bismarck1008
opened
1 day ago
0
Run set clean has multiple run ids in read files
#59
bismarck1008
opened
4 days ago
6
ERROR ~ Error executing process > 'egapx:setup_genome:get_genome_info'
#58
dgpinheiro
opened
4 days ago
2
Crash during alignment stage after 3.1 update
#57
anearman
opened
6 days ago
9
How to adjust CPU usage when running tasks with Singularity on a local server?
#56
MrbrilliantLL
closed
1 day ago
2
Crash when running 0.3.0-alpha
#55
richard-burhans
opened
1 week ago
1
use "mkdir -p" instead of "mkdir" so the job does not fail if the directory exists (nextflow is running these with "bash -ue")
#54
richard-burhans
opened
1 week ago
0
Release 0.3.1-alpha
#53
victzh
closed
1 week ago
0
egapx:annot_proc_plane:gnomon_biotype:run_gnomon_biotype
#52
bbista
closed
1 week ago
1
gene structure annotation
#51
guo-cheng
closed
5 days ago
1
singularity image download
#50
guo-cheng
closed
2 weeks ago
4
Could not find path for ortho taxid 7227
#49
bismarck1008
closed
4 days ago
5
Update README.md
#48
etvedte
closed
2 weeks ago
0
Execution failed for '/scratch/...' No such file or directory
#47
bbista
closed
2 weeks ago
3
Release 0.3.0-alpha
#46
victzh
closed
2 weeks ago
0
error with softmasked genome file
#45
Dooozy
closed
2 weeks ago
2
No Internet access for work nodes. Was: Error: (106.16) Application's execution failed (CException::eUnknown) failed to create temporary path
#44
CEPHAS-01
closed
1 week ago
19
rnaseq_short_plane:star:run_star (1)` failed
#43
yifeng-evo
closed
2 weeks ago
4
cross-species annotations
#42
paulvhi
closed
2 weeks ago
3
ERROR ~ Error executing process > 'egapx:annot_builder:annot_builder_run'
#41
guo-cheng
closed
2 weeks ago
0
rnaseq_collapseļ¼Perhaps the program crashes due to excessive thread usage
#40
bismarck1008
closed
1 day ago
3
mktemp: failed to create directory via template 'tmp.XXXXXXXXXX': Read-only file system
#39
CEPHAS-01
closed
2 weeks ago
8
Add the step "Integrating RefSeq and Gnomon annotations"?
#38
bioswarm
closed
1 month ago
2
gnomon_training error
#37
guo-cheng
closed
5 days ago
20
Offline mode: could not Download EGAPx related files from NCBI
#36
bismarck1008
closed
1 month ago
2
gnomon_training error
#35
guo-cheng
closed
1 month ago
1
multireader: command not found
#34
fishman311
closed
2 weeks ago
1
removed duplicate wordings
#33
pstrope
closed
2 months ago
0
STAR alignment threads not set to maximum?
#32
Andy-B-123
closed
2 months ago
3
gnomon_training error
#31
guo-cheng
closed
1 month ago
8
Test run error
#30
guo-cheng
closed
2 months ago
0
Options to improve annotations and eliminate premature stop codons?
#29
sheinasim
closed
1 week ago
3
Missing single exon gene predictions
#28
abs-yy
closed
1 week ago
3
Question: partial annotation
#27
Artifice120
closed
2 months ago
2
Relocate requirements.txt
#26
JAlvarezJarreta
closed
2 weeks ago
4
Error using input_D_farinae_small_rnaseq.yaml (v0.2-alpha)
#25
richard-burhans
closed
3 months ago
1
file formats
#24
pstrope
closed
3 months ago
0
Incomplete run marked as completed
#23
Artifice120
closed
3 months ago
6
New update fails example data ?
#22
Artifice120
closed
4 months ago
5
v0.2
#21
pstrope
closed
4 months ago
0
update from prod
#20
pstrope
closed
4 months ago
0
Output GFF3 misses attributes
#19
ZuyaoLiu
closed
4 months ago
2
local genome, RNAseq and protein files
#18
xingwu2
closed
2 months ago
4
SRR fails to be read (singularity)
#17
Artifice120
closed
4 months ago
2
Run error (singularity)
#16
Artifice120
closed
5 months ago
9
Error in test run ( nextflow )
#15
Artifice120
closed
5 months ago
4
Error executing process
#14
znelson999
closed
3 months ago
15
Method for using PacBio Iso-Seq reads?
#13
dluecke
closed
5 months ago
5
run_rnaseq_collapse exit status 3
#12
zilov
closed
2 months ago
6
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