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I tried to install cuml using conda, but received an error. I am in a conda environment with cuda = 11.3 and glibc = 2.31. Any help diagnosing the problem would be appreciated. Is cuml compatible with…
rpeys updated
10 months ago
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Creating different files representing specific functional categories to store the functions will make them more accessible. I propose this be done by both analytical purpose aswell as the nature of th…
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hello, @vitkl .
I have slides from three groups, and following previous tutorials (https://cell2location.readthedocs.io/en/latest/notebooks/cell2location_short_demo.html#1.-Loading-Visium-data), I'v…
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After clustering cells with a restricted gene set, I would like to see the contribution of "specified genes" in subgrouping the cells. "sc.tl.rank_genes_groups" uses all the genes in the background fo…
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**Describe the bug**
On constrained cases where maybe the object store cache size is not big enough, you can see the job requesting objects actually proceeding when some of the objects are not pres…
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Hi,
scDEC is a very interesting and useful tool.
But I have some confusions when reproducing forebrain results.
my parameters:
- data = 'Forebrain'
- model = importlib.import_module("model")
- n…
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May i ask 1 question:
if data is already pseudobulk object from scRNAseq data with logCPM value, how can i change it back to a seurat object with counts value? Can i still use above method to turn …
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There are often very non-obvious, but simple things that sometimes prevent ecosystem packages from "going mainstream". We should write a tutorial/guide on do's and don't's for building ecosystem packa…
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It a wonderful computational tool!! When I test the PBMC pair dataset(https://uniport.readthedocs.io/en/latest/examples/PBMC/pbmc_integration.html) with harmony, I can't reproduce result displayed in…