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The call `seqan::readRecords(meta, seqs, quals, file);` on a fastq file places into `quals` strings of only `ACGT` characters replacing everything else with `A`. I'm expecting a full range of Phred sc…
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@justcalamari would it be possible to do the syntax migration in topo (or pseudo-topo) order? I don't think we need to have the syntax changes depend on parent syntax changes, but it would be nice to …
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Greetings!
I'm curious if there is any convenient way of computing the canonical hash of a DNA sequence (such that the sequence and its reverse complement hash to the same value)? Or is this left a…
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Add cli option :
-f --filter option takes the file to filter
-o --output takes the file name where the filtered data is written
Supported format :
- [x] fasta file (required seqan)
- [x] f…
natir updated
6 years ago
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I would like to convert seqan::IupacString to QString or std::string... Unsucessfully. Any idea ?
seqan::IupacString str = rec.seq; // ok
std::cout
dridk updated
6 years ago
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I'm trying to work with int strings (not char), so the max value for unsigned int is >4 billion.
Iterator is created OK with `Index`, but triggers **bad_alloc** with `Index` trying to allocate >4e9 e…
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Versions:
> Linux 4.13.0-38-generic #43~16.04.1-Ubuntu SMP Wed Mar 14 17:48:43 UTC 2018
> x86_64 x86_64 x86_64 GNU/Linux
>
> GNU bash, version 4.3.48(1)-release (x86_64-pc-linux-gnu)
>
> lamb…
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In Debian, we ship the current stable release 1.0.2 of Lambda. This version recently stopped to build from source with the following error:
```
/usr/include/seqan/align_extend/align_extend.h:203:3…
satta updated
6 years ago
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Hello SeqAn team,
Thank you for all your hard work. I am writing this issue because I believe I have discovered a bug `seqan::jumpToRegion(...)` in the latest development files of SeqAn. To reprodu…
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I get a ton of warnings building our documentation.
Apparently, `short_id` seems to be the issue.
https://github.com/seqan/seqan3/blob/7fbbefe94b542499ad58bd9293092fe9b84b2a9e/include/seqan3/arg…