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natir
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yacrd
Yet Another Chimeric Read Detector
MIT License
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Obtaining the non-chimeric reads
#56
desmodus1984
closed
4 weeks ago
3
many metagenomic samples has redundant reads but not errors
#55
jianshu93
closed
3 months ago
3
yacrd for detecting chimeras in amplicon sequences
#54
Robvh-git
closed
11 months ago
3
Order of Chimera detection and scrubbing
#53
Rohit-Satyam
opened
1 year ago
2
Detection of chimeras in nanopore reads
#52
fernanarr
closed
1 year ago
6
Error while running yacrd
#51
SFreddi
closed
2 years ago
6
Bump regex from 1.5.4 to 1.6.0
#50
dependabot[bot]
closed
2 years ago
2
Why the overlap?
#49
emiliomastriani
closed
2 years ago
2
Compilation error due to incompatible clap version?
#48
dpryan79
closed
2 years ago
3
how about using -X when running minimap2?
#47
jflot
closed
2 years ago
1
raw fastq file sequences ID did not fully appear in the *report.yacrd
#46
jiajia19901101
closed
3 years ago
5
What pipeline should I use?
#45
Yutang-ETH
closed
3 years ago
7
interpreting results
#44
colindaven
closed
3 years ago
5
Fix typos
#43
Ebedthan
closed
3 years ago
1
Mismatched types
#42
dpryan79
closed
3 years ago
2
Faster yacrd
#41
natir
closed
2 years ago
5
Filter from .yacrd report
#40
Maraikep
closed
4 years ago
8
yacrd parameters optimization
#39
SergeiF1987
closed
4 years ago
4
Error: --input provided more than once....
#38
nextgenusfs
closed
4 years ago
2
thread 'main' panicked at 'slice index starts at 8092 but ends at 7507'
#37
dominik-handler
closed
4 years ago
12
escape characters `/` and `\` in ondisk filename
#36
natir
closed
4 years ago
1
0.6
#35
natir
closed
4 years ago
0
Reduce memory usage
#34
natir
closed
4 years ago
1
Kernel panic at 'called `Option::unwrap()`
#33
FSciammarella
closed
4 years ago
2
MDA chimeric reads
#32
FSciammarella
closed
4 years ago
3
Comparisons with MiniScrub
#31
FSciammarella
closed
4 years ago
1
Can I use yacrd to remove palindromes in long reads obtained from MDA?
#30
ilnamkang
closed
5 years ago
7
Detect fasta or fastq without use extension
#29
natir
closed
4 years ago
1
thread 'main' panicked at 'called `Option::unwrap()` on a `None` value'
#28
HaploKit
closed
5 years ago
6
yacrd usable for Nanopore cDNA reads?
#27
michieitel
closed
5 years ago
2
Please clarify whether chimeric read detection also performs scrubbing
#26
oneillkza
closed
5 years ago
2
Provide clearer documentation on output file name munging (and/or a means to specify output file names)
#25
oneillkza
closed
4 years ago
2
trouble for installation
#24
dcourtine
closed
5 years ago
1
example for splitting command line
#23
rchikhi
closed
5 years ago
1
Thread 'main' panicked at 'called `Option::unwrap() ERROR
#22
bbalog87
closed
5 years ago
6
trouble in postdetection output generation
#21
natir
closed
5 years ago
1
json output
#20
natir
closed
5 years ago
0
post-detection operation code factorization
#19
natir
closed
4 years ago
0
Better panic message
#18
natir
closed
4 years ago
2
post-chimeric detection operation: extract
#17
natir
closed
6 years ago
0
post-chimeric detection operation: spliting
#16
natir
closed
5 years ago
2
Multi-threading post-chimeric detection operation
#15
natir
closed
4 years ago
0
Multi-threading overlapping file parsing
#14
natir
closed
4 years ago
0
Accept multiple file as input
#13
natir
closed
6 years ago
0
1.0 progression
#12
natir
closed
2 years ago
0
Update main.cpp
#11
rchikhi
closed
6 years ago
2
Add --version switch
#10
tseemann
closed
6 years ago
1
Compilation error: converting to 'std::priority_queue
#9
tseemann
closed
6 years ago
4
Iterator based parser and new gap detection algorithm
#8
Piezoid
closed
6 years ago
0
read and write compressed file
#7
natir
closed
6 years ago
2
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