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**Version of Singularity**
What version of Singularity are you using? Run:
singularity-ce version 3.11.3-dirty
**Describe the bug**
A clear and concise description of what the bug is.
It ap…
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### Describe the new feature
Can we let `--playlist` be used with more than one APSIM file?
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## Question/Support Request
Running FastSurfer on our HPC cluster with Nvidia H100 fails with an error shown below. Any comments are appreciated.
## Screenshots / Log files
```
Illegal option --…
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A few non-blocking items from #81:
- [ ] https://github.com/nextstrain/docs.nextstrain.org/pull/81#discussion_r760615231
Install WSL 2: Might be possible to simplify this step by telling users…
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I created the singularity of betrax and tried to run this tool on a slurm HPC, but I keep getting the error message below. Any idea.
My slurm is very simple -> bertax.sif bertax -o ${WORK_DIR}/outp…
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I used your SLURM profile, and it works well. However, when I try to submit jobs to SLURM using the --immediate-submit option, Snakemake submits the initial batch of jobs but then immediately tries to…
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Hello,
I'm trying to run cellbender in a singularity container on our HPC using slurm scheduler.
My script looks like this
```
#!/bin/bash
#SBATCH -D /scratch/edoardo.giacopuzzi/cellbender-te…
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### Description of the bug
Still trying to get --run_ancestry working, now encountering a new error during plink command execution:
```
FATAL: container creation failed: image driver mount fail…
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**Describe the bug**
Cannot call `apply_to_image` with displacement field transforms on master, works on 0.5.2.
**To reproduce**
Example from #684 (not related to the issue there)
```
i…
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### Description of the bug
Hello,
Trying to run rnaseq but getting an error.
This is the output of the error:
```
-[nf-core/rnaseq] Pipeline completed with errors-
ERROR ~ Error executing pro…