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Problem:
I would like to use the command line to alter a single command of the config file. This feature is nicely implemented for simple parameters (e.g., config['simple']), but is cumbersome for ne…
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What would be the best practices for doing modern reproducable (and scalable?) science?
- Jupyter notebooks?
- github/gitlab repos?
- published FAIR datasets?
- ???
issues:
- on cloud / …
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This post discusses three issues:
- Conda Installation: Installing Pangolin via Conda is time-consuming and inconsistent. Sometimes specifying the version (`conda install pangolin=4.3 -y`) works, …
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### 1. Lesson Topic
HPC workflows, Maestro
### 2. Lesson Language
English
### 3. Draft materials
https://xorjane.github.io/maestro-workflow-lesson/
### 4. Requirements for existing m…
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Hi,
I am trying to run the DB creation part of the workflow and I am struggling to parse all the locations I need to point to to run on my system locally.
https://github.com/functional-dark-side…
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## Context
In the near future, we would like to support region-specific flu builds and also enable other researchers to use this repository to define their own custom flu builds in the same way [th…
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This bug is based on the following documentation text about `modules`:
- [This kind of deployment is equivalent to just cloning the original repository and modifying the configuration in it.](https…
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## WHAT
**Write** execution workflow for [APA-Scan](https://github.com/compbiolabucf/APA-Scan). Use the provided [small files for testing](https://github.com/iRNA-COSI/APAeval/tree/main/tests/tes…
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## WHAT
**Write** execution workflow for [Roar](https://github.com/vodkatad/roar/). Use the provided [small files for testing](https://github.com/iRNA-COSI/APAeval/tree/main/tests/test_data) (run…
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It looks like there is an update workflow view (intended to be done from the interface?) and then another API view to just rename the workflow - should we have both of these or perhaps just an update …
vsoch updated
3 years ago