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Hello,
I really like cromwell and I'd love to use it, the only problem I see at the moment is the need to copy all input needed in case of using docker and having input distributed over several moun…
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And make sure it preserves input order!
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I could not find on [WDL spec](https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md) something saying that structs could not be used as outputs... so I decide to report here.
This is an ex…
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**Is your feature request related to a problem? Please describe.**
Seqr displays gnomad SV allele frequency, but given the small SV dataset it is hard to interpret allele count.
**Describe the so…
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This appears to be a typo that occurred from CWL to WDL transition, or perhaps existed since the creation of the non-human detect variants pipeline:
Relevant lines in detect_variants_nonhuman.wdl
…
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Not sure if I miss the doc somewhere but is miniwdl supporting [this spec](https://github.com/openwdl/wdl/blob/1.1/versions/1.1/SPEC.md#container) where
> The container key also accepts an array of U…
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1. python2 and python3
https://www.cnblogs.com/thunderLL/p/6643022.html
2. pip3 install xgboost报错，在这里下载了whl，然后D:\Program Files\Python\common>pip install xgboost-0.7-cp36-cp36m-win_amd64.whl，更新（还是没解决…
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This issue was prompted by the following thread on the forum: https://gatkforums.broadinstitute.org/wdl/discussion/10347/localization-via-hard-link-has-failed
By default, cromwell does not specify …
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It's great to be able to see when task outputs are being used by other tasks as inputs. It would be nice to be able to visually see a similar link between task outputs that are declared as task output…
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The input xxxx.g.vcf.gz file was generated using the BAM to VCF Cromwell pipeline: [https://github.com/broadinstitute/wdl-runner](url)
When I ran vcf_to_bq without --run_annotation_pipeline - it r…