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I'm wondering if limit precision should be managed in the spec with a filter like 'precision=6' or should be kept at data file/store behind the web service or both.
This viewpoint comes from 2 main…
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Hello, this is great, and apologies if i am missing something obvious. I have CNV calls based on single cell low coverage WGS, with boundaries very imprecise, and trying to find support in bulk Illumi…
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Hello,
We are developing a bioinformatics workflow for EV-D68 WGS for public health surveillance to be run on Terra.bio. There appears to be an enterovirus nextclade dataset in the github repo, how…
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Should there be a central method of resampling input/intermediate(prior)/output data to avoid double coding and preserve consistency throughout the platform?
Passing on (e.g. prior) data as NetCDF …
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Hi,
I got the following error while testing viga using my own viral contigs:
```
...
Detected 8 ORFs in CONTIG_996.fna
Detected 12 ORFs in CONTIG_997.fna
Detected 8 ORFs in CONTIG_998.fna
…
housw updated
5 years ago
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Hello,
Just started looking into `geodiv` for my research. When I tried to run the example code for `texture_image()`, I get a raster filled with `Inf`. This also occurs when I apply the function t…
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Hi,
I have already used [CNVkit](https://cnvkit.readthedocs.io/en/stable/index.html) to segment my bulk WGS data and generate CNV calls.
Is it possible to shoehorn the output of this, [segment…
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I hope this library supports EPSG coordinates.... then it would be so convenient. Sad to see this came to a halt for a while
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Function `.get_dims()` sorts dimensions according to the canonical axis order if "axis" attributes are provided by the netcdf.
However, this doesn't seem to work as expected if the dimensions in th…