issues
search
ryanlayer
/
samplot
Plot structural variant signals from many BAMs and CRAMs
MIT License
516
stars
66
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
overlapping x and y axis labels
#201
hagen-wende
closed
2 months ago
2
Don't crash on an empty vcf
#200
kdm9
opened
2 months ago
0
Feature Request: Changing the color of the coverage plot
#199
Rohit-Satyam
opened
4 months ago
1
Question about plot interpretation; large putative inversion
#198
jphruska
opened
4 months ago
3
Image size of 2400x165270 pixels is too large. It must be less than 2^16 in each direction.
#197
jingydz
opened
5 months ago
0
KeyError: 'Name'
#196
jingydz
opened
5 months ago
0
Split view coordinates annotated incorrectly
#195
Y-Pei
opened
7 months ago
1
fixes for python 3.11
#194
kdm9
closed
5 months ago
1
Warn if missing samples in BAMs or VCF
#193
pontushojer
closed
10 months ago
0
Temporary fix #189 by limiting matplotlib to <3.7
#192
pontushojer
closed
10 months ago
0
Fix translocation handling and add log messages
#191
pontushojer
closed
10 months ago
1
plot with transcripts error
#190
abrusell
opened
11 months ago
2
png files with additional tick labels
#189
warthmann
closed
10 months ago
4
samplot vcf, only INV, DUP, DEL
#188
warthmann
closed
10 months ago
28
Issues with using the samplot vcf module
#187
karen916
opened
12 months ago
3
Using gff3 files from NCBI for tracks
#186
adramoslp
closed
1 year ago
0
how to obtain read names / co-ordinates to inspect on IGV
#185
proukakis
opened
1 year ago
3
Fix failing tests
#184
pontushojer
closed
1 year ago
1
Jitter long reads
#183
pontushojer
closed
1 year ago
2
Fix legend for long reads
#182
pontushojer
closed
1 year ago
0
svtype = variant.info.get("SVTYPE", "SV")
#181
Jokendo-collab
opened
1 year ago
6
help to interpret Samplot for long reads and how to confirm plots for hundreds of variants
#180
shaghayeghsoudi
opened
1 year ago
0
Speed up read coverage collection
#179
pontushojer
closed
1 year ago
0
samplot vcf - Add stats about filtered variants
#178
pontushojer
closed
1 year ago
0
Improve logging and exit samplot vcf if not samples match
#177
pontushojer
closed
1 year ago
0
Empty html file from samplot vcf
#176
shaghayeghsoudi
closed
1 year ago
5
interpreting samplot deletion
#175
prasundutta87
opened
1 year ago
0
Is the package still working
#174
akhilpampana
opened
1 year ago
4
Translocations - CTX
#173
AriadnaColmeneroCobo
opened
1 year ago
4
Installation issue
#172
min-codes
opened
1 year ago
2
Missing legend (?)
#171
tuannguyen8390
closed
1 year ago
4
Is it possible to output pdf
#170
Gongjiao94
closed
1 year ago
2
Show a popup error when an image is missing
#169
pontushojer
closed
1 year ago
0
fix tests and chr prefix strip
#168
jbelyeu
closed
1 year ago
0
Get only the affected transcript in annotation
#167
prasundutta87
opened
1 year ago
0
legend name query
#166
prasundutta87
opened
1 year ago
0
Samplot is changing chromosome name
#165
Rohit-Satyam
closed
1 year ago
2
no plottable samples with matched alignment files
#164
Duda5
opened
2 years ago
5
Incorrect x-axis genomic coordinates in --zoom mode
#163
ManavalanG
opened
2 years ago
2
Disable long SV truncation
#162
cathaloruaidh
closed
2 years ago
2
get_tabix_iter: reason for interval extension
#161
mchowdh200
opened
2 years ago
0
insert size information for long reads plots
#160
prasundutta87
closed
1 year ago
6
Non-integer molecular identifiers (MI)
#159
chartl-rancho
opened
2 years ago
0
Transcript plotting update
#158
pontushojer
closed
2 years ago
0
Handle GFF with missing "Name" gene attribute
#157
pontushojer
closed
2 years ago
3
pre-trained ML/CNN model
#156
cluhaowie
opened
2 years ago
1
New release?
#155
pontushojer
opened
2 years ago
0
Visualizing translocations
#154
zhemingfan
closed
2 years ago
2
Trouble with interpretation
#153
diyasen2021
opened
2 years ago
1
Plot just the split ends
#152
aaksingh
opened
2 years ago
1
Next