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ryanlayer
/
samplot
Plot structural variant signals from many BAMs and CRAMs
MIT License
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Remove unused option `common_insert_size`
#151
pontushojer
closed
2 years ago
0
Multithread plot generation from VCF
#150
pontushojer
closed
2 years ago
0
Fix incomplete testing
#149
pontushojer
closed
2 years ago
1
Remove unused option `common_insert_size`
#148
pontushojer
closed
2 years ago
0
Add option '--jitter' to avoid overlaps
#147
pontushojer
closed
2 years ago
2
Cleanup unused functions
#146
pontushojer
closed
2 years ago
3
Inversions based on split reads
#145
wbooker
opened
2 years ago
0
Add progress bar for `samplot vcf`
#144
pontushojer
opened
2 years ago
0
Evidence of translocation in samples
#143
markutz556
opened
3 years ago
1
add bump to v 1.3.0
#142
jbelyeu
closed
3 years ago
0
Allow manual scaling of annotation track size and other fixes
#141
jbelyeu
closed
3 years ago
1
No RG field in alignment
#140
OZTaekOppa
opened
3 years ago
8
Feature request: Modify samplot to be usable as a python library
#139
mchowdh200
opened
3 years ago
0
gene annotations overlapped together and not readable
#138
LNGDingj
closed
3 years ago
8
Question about interpreting the plots
#137
davidecarlson
closed
3 years ago
2
error while installing
#136
shuiyanwu778
opened
3 years ago
3
allow csi index for annotation files
#135
jbelyeu
closed
3 years ago
0
csi index for gff3.gz not accepted by samplot
#134
lentil824
closed
3 years ago
4
remove y-axis tick scientific notation
#133
jbelyeu
closed
3 years ago
0
removing overlap ("1e6"---scaling for y -axis insert size) with sample names
#132
am8265
closed
3 years ago
4
samplot plot -q argname conda version differs from readme instructions
#131
mchowdh200
closed
3 years ago
1
how interpret the output
#130
lukaslee1127
opened
3 years ago
1
Visualize Insertion
#129
lukaslee1127
opened
3 years ago
3
max coverage limit
#128
jbelyeu
closed
3 years ago
1
Limiting max of coverage axis
#127
ManavalanG
opened
3 years ago
2
Fixes annotation bug
#126
brwnj
closed
3 years ago
0
Plotting coverage only
#125
mgonzalezporta
closed
3 years ago
2
Why are linked reads not showed in plots? and --ped info
#124
giuliafrascarelli
opened
3 years ago
1
How it works, color and vcf
#123
yasin-uzun
opened
3 years ago
2
read placement changes with different flags
#122
earosenthal
closed
3 years ago
1
Figure mislabeling in the output .png files
#121
earosenthal
closed
3 years ago
1
update to version 1.1.0
#120
jbelyeu
closed
3 years ago
0
samplot errors out when trying to generate png
#119
rsolano1-uw
closed
3 years ago
5
Readability of gene names for samplot annotation
#118
jjfarrell
opened
3 years ago
3
two bugs when parsing vcf
#117
johannesgeibel
opened
3 years ago
3
Gff arrows plotted in wrong position
#116
bmansfeld
opened
4 years ago
4
Warning when running Samplot vcf
#115
MeHelmy
opened
4 years ago
1
Feature Request: duphold stats in samplot
#114
jjfarrell
opened
4 years ago
1
Prevent cutting of coverage peak tip
#113
leiendeckerlu
opened
4 years ago
8
allow alignment file indices with name pattern {filename}.{bai/crai}
#112
jbelyeu
closed
4 years ago
1
Samplot minor fixes, mostly in VCF
#111
jbelyeu
closed
4 years ago
0
BAM index cannot be found
#110
biozzq
closed
4 years ago
2
Support reading SAM files from remote [AWS/GCS] buckets
#109
SHuang-Broad
closed
4 years ago
4
plotting coverage from long reads
#108
KamilSJaron
closed
4 years ago
4
Is the csi index not suitable for samplot?
#107
Jiny000
closed
4 years ago
1
can not parse correct name of chrID
#106
XuewenWangUGA
opened
4 years ago
1
update to 1.0.13
#105
jbelyeu
closed
4 years ago
2
Added larger matplotlib limit handler for chunksize under import, as …
#104
Lswhiteh
closed
4 years ago
2
Error: file has no sequences defined (mode='rb')
#103
soumyarao86
closed
4 years ago
3
updated conda path
#102
jbelyeu
closed
4 years ago
0
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