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Hello there,
I asked this question over here: https://github.com/conda-forge/openimageio-feedstock/issues/47
but they asked me to post here.
Therefore, I would like to ask for some help regarding m…
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Thank you for the very useful tool! I'm trying to use this for my digital pathology project.
I ran the pipeline on two example slides downloaded from [here](http://histoqcrepo.com/) with the defa…
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## System and Software
* aicsimageio Version: aicsimageio-4.0.0.dev6
* Python Version: 3.8
* Operating System: ubuntu linux 20.04
## Description
Trying to open .czi file fails.
## Expected…
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- database to map file-type with viewer services: maps 1:N
- change entrypoint to select viewer because now map is 1:N
- send url to IP
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Some NDPIS images are failing to open, seemingly due to the wavelength value required by [NDPISReader](https://github.com/openmicroscopy/bioformats/blob/f9f8f17d5037dab717cb22507ef9b0d591ed9a8d/compon…
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In yesterday's meeting, we discussed the widespread desire for this spec to handle deterministic, evenly spaced-out chunks within a file, rather than explicitly enumerating each chunk and its offsets.…
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Hello!
Very interested in your work here, as it looks highly relevant to https://github.com/spacetx/starfish/issues/1336
However, the repository is missing a license for use and redistribution. …
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somehow, at this stage one in fact does seem to have access to both the volatile and non-volatile versions of the data:
- https://github.com/BIOP/bigdataviewer-bioformats/blob/master/src/main/java/ch…
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Slide objects should have a method that returns an iterator over "chunks" so that the image can be processed chunk-wise instead of loading the entire thing into memory.
Abstract method should be impl…
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Not to reinvent the wheel we should use work already done by other people to read binany files.
For ``*.sdt`` files that would be [Christoph Gohlke](cgohlke@uci.edu) who wrote a reader for [``*.sdt``…