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**Is your feature request related to a problem? Please describe.**
We have some secondary bioinformatics analyses that benefit from having access to the cleansed reads after a SneakerNet workflow is …
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Hi,
I tried installing MBatch in R following the installation instructions. Th instalation failled after executing *devtools::install_github("MD-Anderson-Bioinformatics/MBatch/package")*.
The error …
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Hello,
I've been using [MultiQC](https://github.com/ewels/MultiQC/) to aggregate sample reports from bioinformatics tools like [FastQC](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/), [A…
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Hello, I read your wonderful work HiC-SGL published in Briefings in Bioinformatics and I have some questions:
1. Whether the inter-chromosome contacts are included when using PCA to obtain the init…
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https://github.com/yang-dongxu/small_tools_of_bioinformatics/blob/1d8ab6664195bdb6d387b5d772dfd9b01f78339a/bw_summary_bed_bins.py#L82-L93
The chaotic output is caused by line 89:
https://github.co…
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Hi,
As the title says, I'm interested in using Pathview as an alternative to the Reconstruct utility from the KEGG website - where you simply copy and paste KEGG identifiers for reactions and compo…
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This is more of a question than an issue but in bioinformatics there's growing momentum behind the use of workflow managers to run pipelines like you're got here. Here are some examples:
- https://…
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Hi brian im having issue using the mini_sprot.pep.
here is my error
BLAST Database error: No alias or index file found for protein database [/nobackup/qkdf72/Trinity/mini_sprot.pep] in search p…
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I've been doing some background research for a project I've been working on. I came across the definition of an OLAP DB and OLAP Cube, and I can't help but see the similarities to Zarr.
https://en.w…
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Hello? I found a typo error in the code. Could you fix it when you have time?
https://github.com/umerijaz/microbiomeSeq/blob/master/R/plot.ordination.R
Line 155
```
anova_table