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Hi,
Traditional ChIP-seq methodologies are not inherently quantitative and therefore do not allow direct comparisons between
samples derived from different cell types or between cells that have expe…
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**frag_res = xxx** mean at xxxkb resolution the 3D model was built?
**domain_res: Size of the domains in bps** mean the resolution of the domains? What should I set its size based on? I don't quite u…
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The Epiviz datasets can't have multigene displays and right now the message in the dataset window is "No default display. Create one in the multigene curator." Is it possible to have something like "N…
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### Stories
Based on recent UX Research - [Be Confident About Dataset Quality](https://docs.google.com/presentation/d/1MhPM27nFfGi7FJ4a6Oi6DAD2SVczpQnJ7WURgDyD3EY/edit#slide=id.gcddcdc5941_0_38), Amb…
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- [ ] FYPO:NEW | decreased spatial extent of mating-type region heterochromatin assembly
related to
FYPO:0007480 | decreased spatial extent of subtelomeric heterochromatin assembly
- [ ] Increase…
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Paper:
Integrated single-cell transcriptomics and epigenomics reveals strong germinal center–associated etiology of autoimmune risk loci
https://www.science.org/doi/10.1126/sciimmunol.abh3768
Si…
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HULC complex has parent 'heterochromatin' but sometimes it is euchromatin?
Maybe just move up to 'chromatin?'
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Nice work on benchmarking diverse tools!
For DeepSEA, it's more accurate as `identifying chromatin features from DNA sequences`, not RNA-binding proteins.
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* **InterPro ID / label**
GO:0043139 | 5'-3' DNA helicase activity | IEA with IPR027238
* **Example sequences with problematic annotation (ID + gene/protein name):**
rvb1 https://www.pomb…
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Not yet certain if this is bug in code or in my head, but...
annotations