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From a CDEvents point of view, we have the flexibility to define the content of events produced by pipeline orchestrators. While the specifics of the parent pipeline and pipeline orchestrator behavior…
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Hi @maurolepore,
As agreed on the email yesterday, we will be working on generating toydata, which will be included to the data pipelines so sample data can be generated from the latest data taken fr…
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A biological analysis is sometimes more appropriately called a pipeline. This is because it generally consists of many steps, using many different software and data formats. Yet, these analysis pipeli…
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In order to submit an issue, please ensure you can check the following. Thanks!
* [ ] Declare which version of Python you are using (`python --version`)
* [ ] Declare which operating system you ar…
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In order to solve the `O(n)` problem when fetching nested objects we should consider an interface / API for shared pipelines when fetching data.
There are a few known patterns for solving this proble…
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Hi
Due to the lack of trio data, we used HiFi + HiC to complete the assembly of the haplotype. For the evaluation of switch error rate, most pipelines require trio data. Let's ask if there is a pipel…
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### Acceptance Criteria
- [ ] Sender has tested in staging and production
- [ ] RS engineer has determined the data is good enough and graduates Sender to send Prod data to receiver
### To Do
- …
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#### Environment details
Cloud Run with google-cloud-logging==3.9.0
#### Steps to reproduce
1. main.py from here: https://cloud.google.com/run/docs/quickstarts/jobs/build-create-python
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```
File "/home/vmagent/app/pipelines/epidemiology/xx_wikipedia.py", line 104, in parse: assert data is not None and len(data) > 0
at run (/home/vmagent/app/lib/data_source.py:205)
at _run_wrapper …
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As we know, data used in RAG applications comes from all kinds of sources, and while its easy to work with unstructured data that is in a text format like markdown, html, txt, json, etc, it is not so …
Hisma updated
1 month ago