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Hi,
I had optimised the batch size parameter (as noted in #660) using a test subset of my data which saw drastic improvements in 0.5.3 (Samples/s: 1.034746e+05 vs Samples/s: 3.626776e+06)
I have…
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Hi
This is not a bug, but a question.
I'm in the search for a software that can help me build a HMM that can identify imprinted regions using data produced with dorado and modkit from Oxford Nan…
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Hi I am running dorado-0.7.0 on my older sequence files where I converted fast5 files to pod5 and I used the SQK-LSK109 sequencing kit for these samples? Is there another kit I can choose from the has…
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# Issue Report
## Please describe the issue:
During installation of MinKNOW or restarting the computer,
`/opt/ont/dorado/bin/dorado_basecall_server --version` hangs indefinitely and the minkno…
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Oxford Nanopore Technologies (ONT) have integrated their new basecaller [Dorado](https://github.com/nanoporetech/dorado) into MinKNOW (the controller software on thier devices, including MinION). I no…
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Hello! I successfully produced BAM files after running POD5 files through dorado (SUP), but when I try to run it through the summary function, "dorado summary calls.bam" I get, "[E::hts_hopen] Failed…
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# Using bam files demuxed by Dorado with NanoPlot?
## Please describe the issue:
I ran rapid barcoding library (SQK-RBK114-24) on MinIon using barcodes 1-4. I basecalled the pod5 file and aligne…
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Dear ONT team,
I am trying to re-squiggle my RNA data using Remora after I basecalled the data with Dorado. Comparing the analysis from Tombo and Remora on the same dataset, I obtain different resu…
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# Issue Report
## Please describe the issue:
*Please provide a clear and concise description of the issue you are seeing and the result you expect.*
## Steps to reproduce the issue:
*Pleas…
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Hello!
Could you please provide me with the information on your plan about adapter trimming incorporating to the Dorado. It is the feature I rely on in my workflow and it was that I used in guppy. No…