nanoporetech dorado issues

nanoporetech / dorado

Oxford Nanopore's Basecaller

https://nanoporetech.com/

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issues

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Request: Document GPU Performance in a Table

#1147 Kirk3gaard opened 1 day ago
3
Dorado no-call for 6mA

#1146 zhongzhd opened 1 day ago
0
Question about "Custom-Kit" in poly(A) Config File

#1145 VBHerrenC opened 2 days ago
9
README.md missing inclusion of run ID information in dorado demux

#1144 claczny opened 2 days ago
0
Resume from question.

#1143 cahuparo closed 1 day ago
1
Modification tags and re-calling

#1142 wanghlv opened 3 days ago
1
Model downloaded cannot be used

#1141 cent0134 opened 3 days ago
2
Is it possible to perform demux while basecalling?

#1140 liuzhen51032 opened 3 days ago
5
minimap2 parameters removal in v0.8.0

#1139 mulderdt closed 1 day ago
3
Multiple GPU support for dorado?

#1138 Amekn closed 3 days ago
2
memory (RAM) usage for dorado correct

#1137 stephrom opened 4 days ago
2
Using spot instances to reduce compute costs

#1136 kopichris closed 3 days ago
2
Q: No supported chemistry found for <..>

#1135 sklages closed 3 days ago
9
whether reads sequence of basecaller out bam contains polya sequence?

#1134 JhinJhinJhin closed 3 days ago
2
Aligner: Create a merged file when using folder as input

#1133 billytcl opened 6 days ago
2
dorado run time- super high accuracy, promethION

#1132 YiJessePi opened 1 week ago
5
Bases are emitted from strided blocks within polyA region (SQK-RNA004)

#1131 magmir71 closed 3 days ago
3
How to check the modification model version

#1130 hungweichen0327 closed 1 week ago
5
cuDNN error: CUDNN_STATUS_NOT_INITIALIZED when I run methylation calling

#1129 ymb943 closed 1 week ago
1
Dorado cannot find GPU

#1128 baozg closed 1 week ago
7
Issue with --estimate-poly-a

#1127 Suchi-alt closed 1 week ago
6
Methylation calling v5.0.0_5mCG_5hmCG@v2 model output non-CpG results

#1126 liuyang2006 closed 1 week ago
6
Question about `--estimate-poly-a` and Adapter Removal in DRS Basecalling

#1125 Taylorain closed 1 week ago
4
Dorado demux unexplained unclassified read

#1124 GeorgescuC opened 1 week ago
8
'XM' tag not found by grep. (call from pod5)

#1123 ysuzuki1978 closed 1 week ago
1
m5C and inosine base-calling models argument not found

#1122 kamaloxfordpathology closed 2 weeks ago
2
SUP Modification Basecalling Model Architecture

#1121 harikaurel closed 1 week ago
1
modified basecalling analysis for m6a modification of RNA

#1120 Seongmin-Jang-1165 closed 2 weeks ago
2
Recommended max_barcode_penalty for a given barcode length

#1119 lonsbio closed 1 week ago
5
Question on CpG Island-Specific Methylation Analysis Using Dorado

#1117 Taylorain closed 2 weeks ago
2
Automated Model Selection for Fast5 File to FastQ File

#1116 pinkfairy57 closed 1 week ago
1
Duplex from pre-basecalled BAM

#1115 jmpolinski closed 1 week ago
4
Log command output failed

#1114 liuyang2006 closed 2 weeks ago
2
dorado basecaller: model dna_r10.4.1_e8.2_400bps_hac@v5.0.0 slower than dna_r10.4.1_e8.2_400bps_sup@v5.0.0

#1113 davidebolo1993 closed 2 weeks ago
3
Dorado correct running very slowly when merging different runs

#1112 SimonaSecomandi closed 3 weeks ago
3
Dorado Demultiplexing Inconsistency

#1111 okverynice closed 1 week ago
3
Quality score differences when running dorado on the Gridion vs on a linux server

#1110 abridgeland opened 3 weeks ago
3
Why was 260 bps deprecated?

#1109 hjarnek closed 1 week ago
8
estimate polyA doesn't find tails well with custom primer

#1108 shaohuishi opened 3 weeks ago
3
Methylation tag (MM:Z) broken when there are no methylated cytosines called for dna_r10.4.1_e8.2_400bps_hac@v5.0.0 basecalling model

#1107 jenni-westoby opened 3 weeks ago
1
correct from-paf does a little chunk then stops

#1106 matthewhvandam opened 3 weeks ago
1
Request CpG methylation detection command

#1105 liuyang2006 closed 3 weeks ago
2
Where to get `2021-05-17_dna_r9.4.1_minion_96_29d8704b` model

#1104 Rohit-Satyam closed 1 week ago
2
Dorado 'sup' RAM overflow on Windows, only with large pod5 files (weird bug)

#1103 GabeAl opened 3 weeks ago
2
alignment with "dorado basecaller" command

#1102 Flower9618 closed 2 days ago
2
Significant decrease in demux yield going from dorado-v0.5.1 to dorado v >= 0.7.3

#1101 wshropshire closed 3 weeks ago
3
The lowest GPU memory required for dorado correct？

#1100 hrluo93 opened 4 weeks ago
3
dorado: "-o" is now ambiguous: refers to both output directory and "overlap"

#1099 GabeAl closed 4 weeks ago
1
Dorado 0.8.2 crashes when calling methylation

#1098 Kirk3gaard closed 2 weeks ago
6
Can Dorado move the Adaptor designed by us with known sequence

#1097 LongYuan0529 closed 2 weeks ago
3