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nanoporetech
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dorado
Oxford Nanopore's Basecaller
https://nanoporetech.com/
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Question about pseU calling model rna004_130bps_sup@v5.0.0_pseU@v1
#867
AnWiercze
opened
3 weeks ago
3
CUDA illegal memory access was encountered with Dorado v0.7.1
#866
fehofman
opened
3 weeks ago
4
How are qs tag values calculated?
#865
james-e-barrett
closed
3 weeks ago
6
Error when running read corection
#864
dmacguigan
closed
3 weeks ago
3
Dorado correct Core Dump
#863
MaxSchmidt1
closed
3 weeks ago
2
dorado correct the result requirements
#862
markme123
closed
4 weeks ago
1
dorado 0.7.0 --batch_size error
#861
markme123
closed
3 weeks ago
1
Segmentation fault with dorado 0.7 basecaller and barcode kit SQK-NBD114-96
#860
mprous1
closed
1 week ago
20
dorado trim lacks --primer-sequences parameter and error in --verbose
#859
pclavell
opened
1 month ago
0
Requested kits [SQK-LSK109] not supported by barcoding configurations/Fast5 to Pod5 unclassified reads
#858
lucyintheskyzzz
closed
3 weeks ago
15
Error with cmake
#857
ipatop
closed
3 days ago
2
`dorado download` get only the sup model instead of all models
#856
StephDC
closed
3 weeks ago
5
Dorado 0.7.0 duplex with modified bases: throws '[error] basic_string::substr: __pos' and may abort
#855
janpb
opened
1 month ago
15
What kit to choose for old sequences using the SQK-LSK109
#854
lucyintheskyzzz
closed
1 month ago
3
base modifications for mRNA
#853
yul96
closed
1 month ago
3
Dorado Conda install
#852
AzlanNI
closed
1 month ago
1
`dorado correct` discarding reads in repeats
#851
diego-rt
opened
1 month ago
4
dorado duplex: CUDA error `c10_cuda_check_implementation`
#850
caspargross
opened
1 month ago
4
CUDA error: out of memory on Dorado 0.7.0 with dna_r10.4.1_e8.2_400bps_sup@v5.0.0
#849
VBHerrenC
closed
1 month ago
4
dorado basecaller making up read IDs
#848
JWDebler
closed
4 weeks ago
2
[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip
#847
JWDebler
closed
3 weeks ago
2
Adding computational flexibility to `dorado correct`
#846
sivico26
opened
1 month ago
2
[question] polishing after read correction
#845
JWDebler
closed
1 month ago
1
`dorado correct`: terminate called after throwing an instance of 'c10::DynamicLibraryError'
#844
AndreaGuarracino
closed
1 month ago
4
Dorado correct terminates due to unsufficient memory
#843
stevebaeyen
closed
1 month ago
2
dorado 0.7.0 RNA004 modbase calling results in CUDA error
#842
pre-mRNA
opened
1 month ago
7
Would I use Dorado correct for all reads or simplex reads
#841
hungweichen0327
opened
1 month ago
8
Make longer alias strings possible in demux
#840
simondrue
opened
1 month ago
0
Dorado correct error
#839
chen1i6c04
closed
3 weeks ago
6
dorado correct
#838
youngnd
opened
1 month ago
16
[error] Unsupported device: metal | Attempting to use M3 Pro GPU for Dorado Basecalling
#837
akhilp24
closed
1 month ago
11
Question regarding models
#836
aistBMRG
opened
1 month ago
2
Trimming barcodes behaviour with demux --no-trim
#835
francesco227
opened
1 month ago
3
Inquiry regarding demultiplexing of FAST5/pod5 files using Dorado
#834
mdzohorulislam
opened
1 month ago
3
Dorado correct fails to run
#833
samuelmontgomery
closed
3 weeks ago
2
Looking for custom barcodes for both fwd reads and rev complement reads
#832
godotgildor
closed
3 weeks ago
3
dorado correct runtimes
#831
diego-rt
closed
3 weeks ago
8
`max_barcode_cost` not defined
#830
godotgildor
closed
1 month ago
2
dorado correct question
#829
evandiego83
opened
1 month ago
1
Dorado instalation fails
#828
lrcfsalex
closed
1 month ago
12
Is possible to do the joint modification calling of DNA 6mA and CpG methylation on the same time?
#827
DexinYang1998
closed
1 month ago
2
Running Dorado on EXP-NBD104 kit
#826
lucyintheskyzzz
closed
1 month ago
3
Question about "--no-trim" option for basecalling and demux
#825
lucyintheskyzzz
closed
1 month ago
4
Error running dorado basecaller 0.7.0 using model rna004_130bps_sup@v5.0.0: double free or corruption (fasttop)
#824
heruiyang
opened
1 month ago
12
Calling 0 length poly(A) tails
#823
eschiks
opened
1 month ago
1
Can dorado call m6A modification on RNA002 sequence data?
#822
yinyuanmtu
closed
1 month ago
2
No supported chemistry found for flowcell_code: 'FLO-MIN106' sequencing_kit: 'SQK-RNA002'
#821
dar19
closed
1 month ago
2
Redo basecalling on both POD5_pass and fail folders
#820
Harper19
closed
1 month ago
2
Failed to download rna002_70bps_hac@v3: Could not establish connection
#819
wangguiqian
closed
1 month ago
3
Dorado basecalling
#818
duhuipeng
opened
1 month ago
4
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