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/variants/DMD/unique?search_var_status=%3D%22Marked%22%7C%3D%22Public%22 returned error in code block Custom_ViewList::viewList().
Query : SELECT CONCAT(vog.id, IFNULL(CONCAT(":", vot.transcriptid), …
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- [x] Build "bookmark" tab out with drag and drop for re-arrangement
- [x] wrap JSONArray / JSONObject of view objects
- [x] persist Bookmarks to users
- [x] enable "duplicate" function of bookm…
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- [x] Spin up a second instance of the ModelSEED website **(6/29)**
(**EDIT**: Neal decided to use a plant/microbe toggle within the same ModelSEED website, keeping all functionality in a single …
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This is purely for the workshop itself, and will be revised again, afterwards, for the paper itself.
1) Transcriptomics Flux Balance Analysis:
- [x] 1. Test back-end tFBA with uploaded expression dat…
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Hello,
When I run rsem-prepare-reference with refseq it only captures "exon" in my gff3 file. I'm not sure why the gff3 even has exons because I work with a bacterium. I only realized this issue beca…
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This seems to be a true path violations as something cannot be both
macromolecule metabolic process and small molecule biosynthetic process.
This is a tRNA modifications which is synthesised in tRNA…
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I'm editing this list in place, now, so that there'll not be any surprises when I get back from England:
1) Development Deployment:
At time of writing, the development environment is active, and …
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Clicking on the edit icon does nothing:
![screen shot 2016-08-22 at 10 02 00 am](https://cloud.githubusercontent.com/assets/4291636/17857412/a7015878-684f-11e6-963b-cf494e077eb0.png)
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- [ ] create annotation from evidence (was working)
- [x] modify coordinates with evidence (e.g,. modifying exon boundary) (was working)
- [x] **annotate on the RHS scaffold** (need to update back…
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When profiling running the default settings of `ponyge.py` in `PyCharm` (as `python ponyge.py`) it seemed like mapper was taking a relatively long time.
Changing some `list` to `collections.deque` a…