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deweylab
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RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
http://deweylab.biostat.wisc.edu/rsem/
GNU General Public License v3.0
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Not sure if rsem is using --num-threads option...
#217
siyer-broad
opened
1 week ago
0
bam only containing aligned reads produced different expression profile
#216
TwoFlowers1
opened
1 month ago
0
rsem-generate-ngvector command not found
#215
yma122
opened
2 months ago
1
Two mates are aligned to two different transcripts
#214
albustruong
closed
3 weeks ago
1
cleaned.fq.gz: command not found
#213
albustruong
closed
2 months ago
3
Gtf file
#212
luisafmc
opened
3 months ago
0
rsem-parse-alignments and rsem-build-read-index
#211
project-FSL
opened
3 months ago
0
Using STAR BAMs from genomic alignment
#210
charlesdavid
closed
4 months ago
2
rsem-prepare-reference arguments
#209
baizhantianyu
opened
4 months ago
0
error when using convert-sam-for-rsem to a RSEM compatible BAM file.
#208
qxf1995
opened
4 months ago
0
Pearl error
#207
ericabrophy
closed
5 months ago
0
RSEM deal with multimapping?
#206
marwa38
closed
3 months ago
1
about gffcompare
#205
fafuyyk
opened
9 months ago
0
Problem implementing a reverse-strand specific analysis
#204
sknaack
opened
10 months ago
2
fix[typo]
#203
J-81
opened
11 months ago
0
genomeSAsparseD option for RSEM Star?
#202
Leelab-623
opened
11 months ago
0
The SAM/BAM file declares less than one reference sequence!
#201
Heterosigma
opened
1 year ago
2
how to simulate single-end reads?
#200
yhg926
opened
1 year ago
0
import using tximport for the rsem count table to get integers?
#199
marwa38
opened
1 year ago
0
gene id
#198
km-2021
opened
1 year ago
0
rsem-calculate-expression
#197
km-2021
opened
1 year ago
0
single-cell-prior is not giving me any values
#196
TdzBAS
opened
1 year ago
1
to run RSEM for 3 samples
#195
anitha-2211
opened
1 year ago
1
No valid read to estimate the length distribution!
#194
TdzBAS
opened
1 year ago
1
rsem-prepare-reference with filtered GTF
#193
TdzBAS
opened
1 year ago
0
differential splicing simulation
#192
TdzBAS
opened
1 year ago
0
Does RSEM need HI:i:<n> tag to correctly process multimappers?
#191
apredeus
opened
1 year ago
2
Inconsistent results in rsem-plot-model
#190
sschrstn
opened
1 year ago
0
"make" error on mac (log attached)
#189
thisisamirv
opened
1 year ago
1
positive counts with ZERO effective length, FPKM and TPM
#188
gianfilippo
opened
1 year ago
0
make install error
#187
shun1w
opened
1 year ago
1
How can I get the gene expression only with uniquely mapped reads by rsem-calculate-expression?
#186
zjuzexian
opened
2 years ago
0
make install error
#185
eidamama
opened
2 years ago
2
RSEM can not recognize reference sequence name
#184
brianpenghe
closed
2 years ago
1
expression level of some genes is different when watching BAM file
#183
dahun73
closed
2 years ago
2
rsem-calculate-expression working just with sudo in front
#182
mavino
closed
2 years ago
1
Improvements from our RNA-Seq pipeline
#181
arteymix
opened
2 years ago
0
Is it necessary to provide a BAI file to RSEM Calculate Expression when `--alignments` mode is used?
#180
etrh
opened
2 years ago
1
Does STAR index need to be generated with the FASTA outputted by rsem-prepare-reference or can I use the same genome file provided to rsem-prepare-reference?
#179
etrh
opened
2 years ago
12
About samtools
#178
luisafmc
opened
2 years ago
0
rsem-generate-data-matrix error
#177
yukoyoshida
opened
2 years ago
0
Link to website give 403
#176
nh13
closed
2 years ago
1
use pre-built STAR indices
#175
AtheerAS
opened
2 years ago
3
rsem-tbam2gbam soft-clipping (and other) errors
#174
joegeorgeson
opened
2 years ago
0
The issue about make
#173
wbc569668815
opened
2 years ago
0
prepare reference
#172
BaylieRW
closed
2 years ago
1
Update rsem_perl_utils.pm
#171
kpatel427
opened
2 years ago
0
Issue with rsem-prepare-reference!
#170
g-s-2018
opened
2 years ago
0
Error in rsem-tbam2gbam
#169
RenchaoChen
opened
2 years ago
6
3 -tag XM" failed! when running rsem-calculate-expression
#168
deb0612
opened
3 years ago
1
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