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Dear all,
I tried to submit a canu assembly on a SLURM grid enviroment. However, it was unsuccesful. In fact I got the following:
```
Please panic. canu failed, and it shouldn't have.
Stack tr…
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Hello,
I am using the current linux-amd64.
Canu keeps failing at the filterCorrectionOverlaps with no error output. Or it just stops...
I have a large memory box of 2TB.
commands I have tire…
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Hello,
I am brand new to canu, and don't even have my full dataset yet (only 10 fold coverage), but wanted to see if I can get the software to run. I downloaded the binary for Linux, installed Java 1…
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Hi Ryan,
Thanks for your exited Bandage! It is really helpful when the first time someone shown me on a Mac system. But the problem is that I cannot use the function 'Save visible graph to GFA' on Win…
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Execute command: ```canu -p StPcB2a2b -d Canu_Assembly genomeSize=38.5m -pacbio-raw StPacBio2a2b.fastq -maxMemory=30 -maxThreads=8```
```
-- Detected 16 CPUs and 63 gigabytes of memory.
-- Detect…
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Right now we support LastGraph (from Velvet) and GraphML (not sure what assembler(s) output in this format). Filetypes we should definitely look into supporting are GFA and FASTG, and maybe also Trini…
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Hello there,
I managed to get canu working up until the generateCorrectionLayout stage, then got a failure at the generateCorrectionLayout command, Tried to re-run several times, but with no success.…
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Hi, I am stuck at the assembly stage of a ~450 Mb genome using canu version 1.4. Here is the original command:
```
canu -p cargold -d cargold.out genomeSize=450m -pacbio-raw ../20170*/*/Analysis_Re…
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The path line specifies a comma separated list of segment id's followed immediately by an orientation symbol (+ or -). Since both comma's and + and - can be in a segment id, e.g. "S P1+,P2 acgt" defi…
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Hi,
Would you be interested in outputting into fastg format to then view it in @rrwick Bandage tool?