-
```
The routes.txt file in GTFS has a column for route short and route long names.
The converter populates route_short_name and leaves route_long_name empty. It
might be desirable to populate long n…
-
```
Hi,
I have been using using the gt2bed perl script for conversion. Recently I came
across this.
I downloaded gtf file (refflat hg19) from ucsc table browser. When I convert
this gtf to bed, I…
-
```
Hi,
I have been using using the gt2bed perl script for conversion. Recently I came
across this.
I downloaded gtf file (refflat hg19) from ucsc table browser. When I convert
this gtf to bed, I…
-
```
Hi,
I have been using using the gt2bed perl script for conversion. Recently I came
across this.
I downloaded gtf file (refflat hg19) from ucsc table browser. When I convert
this gtf to bed, I…
-
```
Hi,
I have been using using the gt2bed perl script for conversion. Recently I came
across this.
I downloaded gtf file (refflat hg19) from ucsc table browser. When I convert
this gtf to bed, I…
-
GTFS is unusual in that the specification describes a file format, and presents itself as a file format, without any direct description of the entity-relationship model that the file format encodes. M…
abyrd updated
7 months ago
-
Cover all the JSON type [services](https://developer.wmata.com/docs/services/):
## Bus Route and Stop Methods
- [x] Bus Position
- [x] Path details
- [x] Routes
- [x] Schedule
- [x] Schedule…
-
I'm trying to build the CTAT genome lib because the plug and play resources for Fv1.9 do not contain the genome lib build with gencode-v38 which is use during my pipeline.
I tried to generate the lib…
-
I used cuffcompare (v 2.2.1) to compare two sets of trasnctipts.
> cuffcompare -r $ref_gtf -s $genome -o $OUT A.gtf B.gtf
But I found the row number of result XXX.tracking is less than the number of…
-
https://github.com/tgen/jetstream_resources/blob/6ffe2681fef962a8ba0881842aaf1aafd9b4469b/shared_resource_creation_scripts/create_gene_model.sh#L247-L258
We grab the value in column 10, e.g. $10, b…